Query= MSMg01no482_m09.b1 MSMg01no482_m09.b1 CHROMAT_FILE:
MSMg01no482_m09.b1 PHD_FILE: MSMg01no482_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:45 2005
(550 letters)
>mm_chr2_19502008_19502958
Length = 951
Score = 986 bits (510), Expect = 0.0
Identities = 537/548 (97%), Gaps = 5/548 (0%)
Strand = Plus / Minus
Query: 6 ggaattccccttt---tcttcagctgggaaagatgtggcctaagtcctaggggcatccag 62
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggaattcccc--tgaatcttcagctgggaaagatgtggcctaagtcctaggggcatccag 531
Query: 63 agaagaaactacttgtaacagagaagtaaccttgtaggacagacttgcagctgagacaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agaagaaactacttgtaacagagaagtaaccttgtaggacagacttgcagctgagacaat 471
Query: 123 gctgtttattagacatgcctcttgctttctagtttaaactctaccctcatgttataactc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gctgtttattagacatgcctcttgctttctagtttaaactctaccctcatgttataactc 411
Query: 183 ccaacgacagacttaagggagtcactagatctcatgttccctcttcccagtatggccaca 242
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 410 ccaatgacagacttaagggagtcactagatctcatgtttcctcttcccagtatggccaca 351
Query: 243 ttgaacatacttcctttttttctggttttcactgttagtttgactcctttatggaggagg 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgaacatacttccttttttactggttttcactgttagtttgactcctttatggaggagg 291
Query: 303 agtggctgaatctgacttcgtggggtacaggctgtgactcttcagtcctaaaaccatagg 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 290 agtggctgaatctgacttcgtggggtacaggctgtgactcttcagtcctaaaaccataag 231
Query: 363 ttgtcctctgatcagactgccccttcacacacacacacagacatacacagacacacacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ttgtcctctgatcagactgccccttcacacacacacacagacatacacagacacacacac 171
Query: 423 atacacacacccacaataagtaactcacatgattaattaattaattttcacaataccttg 482
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 atacacgcacacacaataagtaactcacatgattaattaattaattttcacaataccttg 111
Query: 483 ggttcccatcctataaagtaacaggtcataagccctaggctatcattcacttaattattt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggttcccatcctataaagtaacaggtcataagccctaggctatcattcacttaattattt 51
Query: 543 ttaacaat 550
||||||||
Sbjct: 50 ttaacaat 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_m09.g1 MSMg01no482_m09.g1 CHROMAT_FILE:
MSMg01no482_m09.g1 PHD_FILE: MSMg01no482_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:45 2005
(597 letters)
>mm_chr2_19346450_19347446
Length = 997
Score = 1046 bits (541), Expect = 0.0
Identities = 581/597 (97%), Gaps = 6/597 (1%)
Strand = Plus / Plus
Query: 1 cacccctacactgccttcctaggatgactttgcagtgataccaacattcagatcagatca 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cacccctacact----tcctaggatgactttgcagtgataccaacattcagatcagatca 262
Query: 61 tatgtgagcagcaaacaaaaggatgcaggcatcctccaggaactggaaagagcaagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatgtgagcagcaaacaaaaggatgcaggcatcctccaggaactggaaagagcaagaaaa 322
Query: 121 ccatgtctccccccaaagcctccaggagaagtgctcctctgccaaccctgtgctacactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccatgtctccccccaaagcctccaggagaagtgctcctctgccaaccctgtgctacactt 382
Query: 181 atagccatttagtctgaaggagtggaagacggtccacttgtgttgctttaagtcactgac 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 atagccatttagtctgaaggagtggaagactgtccacttgtgttgctttaagtcactgac 442
Query: 241 ttctggtatttaggtatggcaaccacagagaactaacaccagcctttcctttcatcattg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttctggtaattaggtatggcaaccacagagaactaacaccagcctttcctttcatcattg 502
Query: 301 gatgatgggcatctatttctgcctctcgagatgtggcgttatgccatctccttgatctag 360
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 503 gatgatgggcatctatttctgcctctcgagaggtgacgttatgccatctccttgatctag 562
Query: 361 gatttcccaccttcagaacttgtgggaaacaagttttttttttaacttacgaattactcg 420
||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||
Sbjct: 563 gatttcccaccttcagaacttgtgggaaacatgtttttttt--agcttatgaattactcg 620
Query: 421 gtttgaagcattatgttgcagcagcaagaaaagattgaaatagaccctcttctcctgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttgaagcattatgttgcagcagcaagaaaagattgaaatagaccctcttctcctgtca 680
Query: 481 ccaaagctagtgatagcacattcctctgaccactttcttctcaatcatatttccttctgc 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaagctagtgatagcatattcctctgaccactttcttctcaatcatatttccttctgc 740
Query: 541 ctccctattctgttctgagaaccctgcaccgtactaccaggaacaaccttttcattt 597
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 ctccctattctgttctaagaaccctgcaccgtactaccaggaacacccttttcattt 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
