BAC Information

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BAC

Clone NameMSMg01-482N06
Chromosome2 (Build37)
Map Location 121,011,787 - 121,073,325
singlet/doubletdoublet
Overlap geneD2Ertd435e, Trp53bp1
Upstream genePla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29
Downstream geneMtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482N06.T7 (MSMg01no482_n06.b1)MSMg01-482N06.TJ (MSMg01no482_n06.g1)
ACCAG562900AG562901
length715737
length of high quality
(start - end)		673 (31 - 703)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no482_n06.b1 PHD_FILE: MSMg01no482_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:49 2005CHROMAT_FILE: MSMg01no482_n06.g1 PHD_FILE: MSMg01no482_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,011,787 - 121,012,455)(121,072,665 - 121,073,325)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGCTTTACT
ATGACATTTGCTGTAGGCTTCTAGAAGGCAGTGTAATAAACTATTCTCTT
CCTAGTTAGCTGGGTTTTTTTCTTAAGTGCTGTCAGGTTTACCAGTTGCC
CCTGTGTTAGTGGAGGAGAGCAGTCTTGCCTTGGATCCATTTCTCTTTCA
TAGTTTTTATATCTGTATGCATTAGTTAAGAAAGACAATTGTCTTATTCT
TGGGTAGTTTTTACATAAGCCTTATAAAATGGGTTAGGTAGGTGCTTTTG
TTCCTTTTCTTTTTGTTTGTTAAACAGTCTGTGTTTTCTTTGTTTGTAAT
TGTTACTTAGAGTTTGAACTTCCCTGAAAAGTGATCTAGGCTTCCTTAGG
AAGAGAACCTTGACTGGCTGAGTATGTTTTAAAACTAAGTTGCCATAAAG
CTTCTTCTTGTAACAGTTTTGATGACTCTGTAGCTTTGCAACTTGACTAT
TTCAGGTGGACTTAAATTTTTAAAATACTTGCTTATCTATAAATAGGTTT
TGTTTTGTTTTGTTTACTTAAGTTTTGTCTTTTAAACATGATTTTGTGGC
CTGTCAGTAGTAGCATAGGGCAGGCAGAGGCAAGTGGATCTCTGCATTTG
AGGCCAGCTTGGTTTACAGGACAACAGCCAGGGCTACAGAGAAACCCTGT
CTAGGAAAAAAAAAN

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCAGATCTTGTTGCTCCTTCCCCT
GATGCTTTCCGATCTACCCCTTTTATCGTTCCTAGCAGTCCCACAGAGCA
AGGAGGGAGAAAAGGTGAGCCGTCGTGATCTGTCTGTTCATCTAGCACAG
GAGACGAGCAGTGCTTGCTCTCCAGCTTTGCCAAATGCACGCTTCCTTGA
GCTTCATCTGAGACACTGCCCCTGAGACTCATGTGTCTAGGACAAACCAC
TCGAGCTCTTTGCTTTTTAAGCATAGATCTTCTACTCTTTTAATTTAGAA
AAAAAATGCTCTGGTGAAAATATTTTGTTTTTAAAATTGAACCCAAGTAA
ATTAGTTTGGGGAAGTACTGGATTTGCTATTACTTGCCAAGTACATTCCG
GGTACATGCTAGCATGTTTCTAAGTGAGAGAAAGCCAGCAGTTGTTTCTA
GGGCTCTTTATTTTTGTTATTATTAAGATAATCGAGTGTGCCTTGAAGGA
GCTGATAAAAATTTTAACTTCCTTTGTCTTATGAGGACTTAGTATCCCCC
TTACCCCAGAGATGTCTCTCTGTAGCTGAGAGTGCCTTGAATATTGGATC
CCCCAGTTTCTACCTCTCTCTACTATAAATAAATAAAGAAATACCCCTCT
ACTATATATATAAATAGAATTGTAATACAATAATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_n06.b1 MSMg01no482_n06.b1 CHROMAT_FILE:
MSMg01no482_n06.b1 PHD_FILE: MSMg01no482_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:49 2005
         (673 letters)



>mm_chr2_121011583_121012655
          Length = 1073

 Score = 1286 bits (665), Expect = 0.0
 Identities = 668/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgctttactatgacatttgctgtaggcttctagaaggcagtgtaataaactat 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcattactatgacatttgctgtaggcttctagaaggcagtgtaataaactat 264

                                                                       
Query: 65  tctcttcctagttagctgggtttttttcttaagtgctgtcaggtttaccagttgcccctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcttcctagttagctgggtttttttcttaagtgctgtcaggtttaccagttgcccctg 324

                                                                       
Query: 125 tgttagtggaggagagcagtcttgccttggatccatttctctttcatagtttttatatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttagtggaggagagcagtcttgccttggatccatttctctttcatagtttttatatct 384

                                                                       
Query: 185 gtatgcattagttaagaaagacaattgtcttattcttgggtagtttttacataagcctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatgcattagttaagaaagacaattgtcttattcttgggtagtttttacataagcctta 444

                                                                       
Query: 245 taaaatgggttaggtaggtgcttttgttccttttctttttgtttgttaaacagtctgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaatgggttaggtaggtgcttttgttccttttctttttgtttgttaaacagtctgtgt 504

                                                                       
Query: 305 tttctttgtttgtaattgttacttagagtttgaacttccctgaaaagtgatctaggcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctttgtttgtaattgttacttagagtttgaacttccctgaaaagtgatctaggcttc 564

                                                                       
Query: 365 cttaggaagagaaccttgactggctgagtatgttttaaaactaagttgccataaagcttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttaggaagagaaccttgactggctgagtatgttttaaaactaagttgccataaagcttc 624

                                                                       
Query: 425 ttcttgtaacagttttgatgactctgtagctttgcaacttgactatttcaggtggactta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttgtaacagttttgatgactctgtagctttgcaacttgactatttcaggtggactta 684

                                                                       
Query: 485 aatttttaaaatacttgcttatctataaataggttttgttttgttttgtttacttaagtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatttttaaaatacttgcttatctataaataggttttgttttgttttgtttacttaagtt 744

                                                                       
Query: 545 ttgtcttttaaacatgattttgtggcctgtcagtagtagcatagggcaggcagaggcaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgtcttttaaacatgattttgtggcctgtcagtagtagcatagggcaggcagaggcaag 804

                                                                       
Query: 605 tggatctctgcatttgaggccagcttggtttacaggacaacagccagggctacagagaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggatctctgcatttgaggccagcttggtttacaggacaacagccagggctacagagaaa 864

                    
Query: 665 ccctgtcta 673
           |||||||||
Sbjct: 865 ccctgtcta 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_n06.g1 MSMg01no482_n06.g1 CHROMAT_FILE:
MSMg01no482_n06.g1 PHD_FILE: MSMg01no482_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:49 2005
         (662 letters)



>mm_chr2_121072465_121073526
          Length = 1062

 Score = 1270 bits (657), Expect = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagatcttgttgctccttcccctgatgctttccgatctaccccttttatcgttcctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctcagatcttgttgctccttcccctgatgctttccgatctaccccttttatcgttcctag 802

                                                                       
Query: 61  cagtcccacagagcaaggagggagaaaaggtgagccgtcgtgatctgtctgttcatctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtcccacagagcaaggagggagaaaaggtgagccgtcgtgatctgtctgttcatctag 742

                                                                       
Query: 121 cacaggagacgagcagtgcttgctctccagctttgccaaatgcacgcttccttgagcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacaggagacgagcagtgcttgctctccagctttgccaaatgcacgcttccttgagcttc 682

                                                                       
Query: 181 atctgagacactgcccctgagactcatgtgtctaggacaaaccactcgagctctttgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgagacactgcccctgagactcatgtgtctaggacaaaccactcgagctctttgctt 622

                                                                       
Query: 241 tttaagcatagatcttctactcttttaatttagaaaaaaaatgctctggtgaaaatattt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaagcatagatcatctactcttttaatttagaaaaaaaatgctctggtgaaaatattt 562

                                                                       
Query: 301 tgtttttaaaattgaacccaagtaaattagtttggggaagtactggatttgctattactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttttaaaattgaacccaagtaaattagtttggggaagtactggatttgctattactt 502

                                                                       
Query: 361 gccaagtacattccgggtacatgctagcatgtttctaagtgagagaaagccagcagttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaagtacattccgggtacatgctagcatgtttctaagtgagagaaagccagcagttgt 442

                                                                       
Query: 421 ttctagggctctttatttttgttattattaagataatcgagtgtgccttgaaggagctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctagggctctttatttttgttattattaagataatcgagtgtgccttgaaggagctga 382

                                                                       
Query: 481 taaaaattttaacttcctttgtcttatgaggacttagtatcccccttaccccagagatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaattttaacttcctttgtcttatgaggacttagtatcccccttaccccagagatgt 322

                                                                       
Query: 541 ctctctgtagctgagagtgccttgaatattggatcccccagtttctacctctctctacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctgtagctgagagtgccttgaatattggatcccccagtttctacctctctctacta 262

                                                                       
Query: 601 taaataaataaagaaatacccctctactatatatataaatagaattgtaatacaataata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataaataaagaaatacccctctactatatatataaatagaattgtaatacaataata 202

            
Query: 661 c 661
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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