NGGGGGGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTATTTCTGAACTGAGAATCCAATTTTATGATATT
TCTAGGTGACTGCCCAAACACCTCCATGCCATTACTTGACAAGACAATGC
ATGAATTCCTCACCAATGTGAAATGCTTCATTTAATTTCAAATCTCATAT
TTCCTTGGTTCTATTTCTGGGATTTCCATGACATCCAATCAATTAGACTG
TTTTCTAACACCATACCATTTTGATTTTTTAGCTTTATGTTTAAATACTA
CCATCTCTAATCCCAAATTAAATCCCCTAAATATTATCTCATGTAAATTG
ATTCAGTATGAAAACAATGAACTAAATTGATATTAATGTATTTGACTTGT
CAGATTAATAACTAAATAGGAGTTGTTGGCATTATCCTGTGAGTCCTTTT
AATGCTATAAATCCCTCTTCGTTTTTTTCTGCTTCAGCTCTCTTTGTAGT
CCTTTTGTCATTTCCTCGGGTGGACTGAACTGTTCTCACATCATTCCAAT
CATACCCTGCTCTAATTTACTCAGCATGACCTTATAGGAGGCTTCGGGTT
TCTGATGGGGTTGAACAACATTATCTTTCACTTTTAAGTACAACACTTTC
ATATTCTGTACACCAGGCATCTAGCTGATGTTAAGGTATCTGTTTTTACT
TACTTGGTTCATGACAATAATTCCAGTGTCTTTGGCAG

NTTTTTCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGACTCCAGA
AAACCAAAAAAAAAAAACCTTATTAAAAATGGGGTACAGAGCTAAACAAA
GGATTCTCAACTGAGGAATACCAAATGCATGAGAAGCACCTAGAAAAATG
TTCAACATCCTTAATCTTCAGGGAAATGCAAATCTAAACAACCCTGAGAT
TCCACCTAACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGACATAGC
AGATGCTGGCAAGGATATGGAGAAAGAGGAACACTCCTCCATTACTGGTG
GAATTGCAAGCAAGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCA
GAATACTAGACATAGATCAGAACACCCAGCAATACCACTCCTGGGAATAT
ACCCAGAATATGCTCCAACTTGTAATAAGGACATATGCTCCACTAAGTTC
TTAGCAGCCTTATTTACAATAGCCAGAATCTGGAAAGAATCCATATGTCC
CTCAACAGACGAATGGATATAGAAAATGTGGTACATATACACAATGGAGT
ACTACGCAGCAATTAAAAACAATGAATTTATAAAATTCTTAGACAAATGT
ATGGATCTGGAGGATATCATCTTAAGTGAGGTAAACCAATCCCAAAAGAA
CACCCATGAGATGCACTTACTGATAAGTGGATATTAGN

Query= MSMg01no483_a01.b1 MSMg01no483_a01.b1 CHROMAT_FILE:
MSMg01no483_a01.b1 PHD_FILE: MSMg01no483_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:02 2005
         (685 letters)



>mm_chr2_107563276_107564360
          Length = 1085

 Score = 1224 bits (633), Expect = 0.0
 Identities = 669/681 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttatttctgaactgagaatccaattttatgatatttctaggtgactgcccaa 64
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gaattcacttaagtatgaactgagaatccaattttatgatatttctaggtgactgcccaa 826

                                                                       
Query: 65  acacctccatgccattacttgacaagacaatgcatgaattcctcaccaatgtgaaatgct 124
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 825 acacctccatgccattacttgacaagacaatgcatgaattcttcgccaatgtgaaatgct 766

                                                                       
Query: 125 tcatttaatttcaaatctcatatttccttggttctatttctgggatttccatgacatcca 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tcgtttaatttcaaatctcatatttccttggttctatttctgggatttccatgacatcca 706

                                                                       
Query: 185 atcaattagactgttttctaacaccataccattttgattttttagctttatgtttaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 atcaattagactgttttctaacaccataccattttgattttttagctttatgtttaaata 646

                                                                       
Query: 245 ctaccatctctaatcccaaattaaatcccctaaatattatctcatgtaaattgattcagt 304
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 645 ctaccatctttaatcccaaattaaatcccctgaatattatctcatgtaaattgattcagt 586

                                                                       
Query: 305 atgaaaacaatgaactaaattgatattaatgtatttgacttgtcagattaataactaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atgaaaacaatgaactaaattgatattaatgtatttgacttgtcagattaataactaaat 526

                                                                       
Query: 365 aggagttgttggcattatcctgtgagtccttttaatgctataaatccctcttcgtttttt 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 525 aggagttgttgacattatcctgtgagtccttttaatgctataaatccctcttcatttctt 466

                                                                       
Query: 425 tctgcttcagctctctttgtagtccttttgtcatttcctcgggtggactgaactgttctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tctgcttcagctctctttgtagtccttttgtcatttcctcgggtggactgaactgttctc 406

                                                                       
Query: 485 acatcattccaatcataccctgctctaatttactcagcatgaccttataggaggcttcgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acatcattccaatcataccctgctctaatttactcagcatgaccttataggaggcttcgg 346

                                                                       
Query: 545 gtttctgatggggttgaacaacattatctttcacttttaagtacaacactttcatattct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtttctgatggggttgaacaacattatctttcacttttaagtacaacactttcatattct 286

                                                                       
Query: 605 gtacaccaggcatctagctgatgttaaggtatctgtttttacttacttggttcatgacaa 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 285 gtacaccaggcatctagctgatgttaaggtatctgtttttacttacttggtttatgacaa 226

                                
Query: 665 taattccagtgtctttggcag 685
           |||||||||||||||||||||
Sbjct: 225 taattccagtgtctttggcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)