BAC Information

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BAC

Clone NameMSMg01-483D03
Chromosome2 (Build37)
Map Location 24,892,620 - 24,893,068
singlet/doubletsinglet
Overlap genePnpla7
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41
Downstream geneNelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D03.T7 (MSMg01no483_d03.b1)MSMg01-483D03.TJ (MSMg01no483_d03.g1)
ACCAG563180AG563181
length889742
length of high quality
(start - end)		---449 (84 - 532)
definitionCHROMAT_FILE: MSMg01no483_d03.b1 PHD_FILE: MSMg01no483_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:18 2005CHROMAT_FILE: MSMg01no483_d03.g1 PHD_FILE: MSMg01no483_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCCCACCCCCCGCTCTATCTCTCTTCCTCCTCTCCCGCCGGCGGCTC
CCCGGGAGGAGTCAGTTGATAGAGGGNCCCAGTACGACCCGGAGGAGATG
TACTATTAGAGNGTGTGTATTATTACATGAAAACCCACACTCCTCCCTAA
CTCCACACGCGCCAAACCGCCGCCGTAGCCCTAACGGGTGCAAACAATAG
ATTCAGGCAGGCAATAGAAAAAAAGATTCCATGTTTGTTGTTCGGGTGTC
TTCCGCCTCGCCCCATAGGATCCGCCTCGATCTCATTCATCGACCCGAGC
CTCGGCACGATTCCGAGACGGGTCATTCAGCGGCGCTCTGTTTTTTTTTT
TGTGTTTGCGCGGTCGAGTGGCGTGTNTTTTTCCCCCTTAAAAAAAATTT
TTGGCGGGGGCCCGGGCCTAAATAACGGAACTTCACTNATTCTGCGGAAA
GAAGGGGATCCCGNCGGGGAAATTTCNTGTAGGTTCCGCAGGGGCCCAGG
CCCCTGGAATCCTAAACAGAAGGTTTTCCAGGGGTACAGGCCCCAAGGGG
GCCTAACCTTTTATTGGCCAAGAAGGAGAACACCCCCCTTGGTNNTGNGG
NNTGGGGGNGGGGGGGGGGCCCGGAGAAAAAAAAAAAAATCCCCCCCCCC
CAATAAGAGGAAAAAAGGGTGGGCGCCCTACAAAAAAAGAGAGAGGGCGG
GAGAAAAAAAAAAAACAAACCACCGGGGCGGGGGGGTTANTAGAAAAAAA
AACAAAAAATTAATTTTTTTTTTTTCTCCGCCTTGCGGCGGGGGGGAGGA
GAAAGAACAGAAAAAAAACTATTCCCCCCCGGCTTTGCATCGGCCGTGAT
CGTGCGCGCCAATAGCATGCGGCGCCCCCACTCCTTCAN

ATTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTTCCAGGACAGCC
AGGGCTACACAGAGAAACCCTGTCTCGGGGATGAGGGGGAGTAGAAACTT
TTTAAGCAGGCAAATCTGTCCCACTACAGAGGAAGAGCAGAGGACAGCAG
GTCCATATGCACCTCGAGGCCACTGCTTCAACCTGGACAGTAGCAAGTAG
CCACACATTTTTAATATCCATCCCTGTTAAGAGGCCATCCTGCGTAAGAT
AGATGAGTTCTTGCAACACAAAACATGTAGGTGCGGGCTGGAGGGATGGC
TCAGTGGTTAAGAGTAGCGGCTGCTCTTCCAGGGGTTCTGAGTTTAATTC
CCAGCAACCACATGGTGGCTCATGATCATCTATACTGGGACCTGATGGAT
CTGGCGCCCATTTCTGGCATGCAAGTGTACATGCAGACAAAGCATTAATT
CAATCAATCAATATTAAAAACAACACACACACACACTACAAACAAACAAA
AACAAAAAACAAGACAGGGAACTAGCTGCTGGCCTAACCCCACTGGGTCT
GCCGGCCCTCCAGGTGCTTCTGCTGTCTAAGTACCCCGCCTGACTCCCTC
TGCCTTCAGGGTATCTTTGCTGTCTAAGTTCCCCCGCTGCTCTTGGAAGC
TCTATTAAAAAGTGGAGAGCTCCCTAGTCTAGAGATCTTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d03.g1 MSMg01no483_d03.g1 CHROMAT_FILE:
MSMg01no483_d03.g1 PHD_FILE: MSMg01no483_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:19 2005
         (449 letters)



>mm_chr2_24892574_24893422
          Length = 849

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagttccaggacagccagggctacacagagaaaccctgtctcggggatgagggggagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgagttccaggacagccagggctacacagagaaaccctgtctcggggatgagggggagta 436

                                                                       
Query: 61  gaaactttttaagcaggcaaatctgtcccactacagaggaagagcagaggacagcaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaaactttttaagcaggcaaatctgtcccactacagaggaagagcagaggacagcaggtc 376

                                                                       
Query: 121 catatgcacctcgaggccactgcttcaacctggacagtagcaagtagccacacattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 catatgcacctcgaggccactgcttcaacctggacagtagcaagtagccacacattttta 316

                                                                       
Query: 181 atatccatccctgttaagaggccatcctgcgtaagatagatgagttcttgcaacacaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 atatccatccctgttaagaggccatcctgcgtaagatagatgagatcttgcaacacaaaa 256

                                                                       
Query: 241 catgtaggtgcgggctggagggatggctcagtggttaagagtagcggctgctcttccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catgtaggtgcgggctggagggatggctcagtggttaagagtagcggctgctcttccagg 196

                                                                       
Query: 301 ggttctgagtttaattcccagcaaccacatggtggctcatgatcatctatactgggacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggttctgagtttaattcccagcaaccacatggtggctcatgatcatctatactgggacct 136

                                                                       
Query: 361 gatggatctggcgcccatttctggcatgcaagtgtacatgcagacaaagcattaattcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gatggatctggcgcccatttctggcatgcaagtgtacatgcagacaaagcattaattcaa 76

                                        
Query: 421 tcaatcaatattaaaaacaacacacacac 449
           |||||||||||||||||||||||||||||
Sbjct: 75  tcaatcaatattaaaaacaacacacacac 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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