Query= MSMg01no483_p23.b1 MSMg01no483_p23.b1 CHROMAT_FILE:
MSMg01no483_p23.b1 PHD_FILE: MSMg01no483_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:24 2005
(561 letters)
>mm_chr2_181586756_181587716
Length = 961
Score = 888 bits (459), Expect = 0.0
Identities = 514/557 (92%), Gaps = 40/557 (7%)
Strand = Plus / Minus
Query: 5 gaattctctctttccctactggatgtctgacctcctatttcctgcctcagcttattggcc 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 687 gaattctctctttccctactggatgtctgacctcgtatttcctgcctcagcttattggcc 628
Query: 65 ataagcttttatattgacaggtgatacgtagtaagagattctctatacctctcttaagaa 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 ataagcttttatattgacaggtgatatgtagtaagagattctctatacctctcttaagaa 568
Query: 125 agtttcctttcaccctgaacataaccaagcacaacataacatcatcctctacataacttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtttcctttcaccctgaacataaccaagcacaacataacatcatcctctacataacttc 508
Query: 185 cctcatccttccaagctctttgtatgtttcattgtggctggttaccaaatgtcaaggctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctcatccttccaagctctttgtatgtttcattgtggctggttaccaaatgtcaaggctt 448
Query: 245 tgtctatgttacctgacacacaaagtaggacaatttagtaaacaattctccactaattga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtctatgttacctgacacacaaagtaggacaatttagtaaacaattctccactaattga 388
Query: 305 agtatttttggaagaaattaaccaaaatgtatgtgttagaactatttataattcacattc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtatttttggaagaaattaaccaaaatgtatgtgttagaactatttataattcacattc 328
Query: 365 atagcctctctctct-t-ttacacacacacacacacacacacacacacacacacacacac 422
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atagtctctctctctctcttacacacacacacacacacacacacacacacacacacacac 268
Query: 423 acacacacacacacacacacacatatatacacacacactcagaggtttaccaaatgtttt 482
||||||||||||||||||||||
Sbjct: 267 --------------------------------------tcagaggtttaccaaatgtttt 246
Query: 483 aagtgatcagaaaagtatgatggatagttttcatttggaaatcctaaatcctcatcactt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aagtgatcagaaaagtatgatggatagttttcatttggaaatcctaaatcctcatcactt 186
Query: 543 tgaaatcctatttttgt 559
|||||||||||||||||
Sbjct: 185 tgaaatcctatttttgt 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_p23.g1 MSMg01no483_p23.g1 CHROMAT_FILE:
MSMg01no483_p23.g1 PHD_FILE: MSMg01no483_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:24 2005
(480 letters)
>mm_chr2_181416793_181417672
Length = 880
Score = 905 bits (468), Expect = 0.0
Identities = 477/480 (99%)
Strand = Plus / Plus
Query: 1 actctgaaactcaggtaagctttgaacttttgatcctcttgccccagcctcctaagtatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgaaactcaggtaagctttgaacttttgatcctcttgccccagcctcctaagtatc 260
Query: 61 tctgagatgataaggcctgtgtcaccaggtttggtagttttcaattagcaataattgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgagatgataaggcctgtgtcaccaggtttggtagttttcaattagcaataattgtgc 320
Query: 121 ctctgataaaccttgttggctatggtgctgttactttgcaaatctgtggctggagtagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgataaaccttgttggctatggtgctgttactttgcaaatctgtggctggagtagag 380
Query: 181 attcctgagagtttaggtagaggcttttaaggtaggaacaggaagagcctgcctactctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcctgagagtttaggtagaggcttttaaggtaggaacaggaagagcctgcctactctg 440
Query: 241 gaggtgcagcctgcctgtagatgctggggaaaagccagggcagaggaaggcagccagggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtgcagcctgcctgtagatgctggggaaaagccagggcagaggaaggcagccagggt 500
Query: 301 tgtctgttacagtacccaggagtagtgctgccctgacgcgcaggcgctttgaggagaggc 360
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 501 tgtctgttacagtacccaggagtagtgctgccctgatgggtaggcgctttgaggagaggc 560
Query: 361 tgctctcccaccacagcacagatggaccaaggttaaagaacccgtgctatacccgtgaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctctcccaccacagcacagatggaccaaggttaaagaacccgtgctatacccgtgaat 620
Query: 421 gtccttccgtgttgagcaggagttggggcatttattttctctagtagtttgttcagtgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccttccgtgttgagcaggagttggggcatttattttctctagtagtttgttcagtgtc 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|