BAC Information

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BAC

Clone NameMSMg01-483P23
Chromosome2 (Build37)
Map Location 181,416,993 - 181,587,442
singlet/doubletdoublet
Overlap geneTcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2
Upstream geneDido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18
Downstream genePolr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483P23.T7 (MSMg01no483_p23.b1)MSMg01-483P23.TJ (MSMg01no483_p23.g1)
ACCAG563792AG563793
length786789
length of high quality
(start - end)
561 (50 - 610)480 (79 - 558)
definitionCHROMAT_FILE: MSMg01no483_p23.b1 PHD_FILE: MSMg01no483_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:24 2005CHROMAT_FILE: MSMg01no483_p23.g1 PHD_FILE: MSMg01no483_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,586,924 - 181,587,442)(181,416,993 - 181,417,472)
sequence
NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCTTTCCCTACTGGATGTCTGACCTCCTATTTCCTGCCT
CAGCTTATTGGCCATAAGCTTTTATATTGACAGGTGATACGTAGTAAGAG
ATTCTCTATACCTCTCTTAAGAAAGTTTCCTTTCACCCTGAACATAACCA
AGCACAACATAACATCATCCTCTACATAACTTCCCTCATCCTTCCAAGCT
CTTTGTATGTTTCATTGTGGCTGGTTACCAAATGTCAAGGCTTTGTCTAT
GTTACCTGACACACAAAGTAGGACAATTTAGTAAACAATTCTCCACTAAT
TGAAGTATTTTTGGAAGAAATTAACCAAAATGTATGTGTTAGAACTATTT
ATAATTCACATTCATAGCCTCTCTCTCTTTTACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACATATATA
CACACACACTCAGAGGTTTACCAAATGTTTTAAGTGATCAGAAAAGTATG
ATGGATAGTTTTCATTTGGAAATCCTAAATCCTCATCACTTTGAAATCCT
ATTTTTGTNAAAAGATATTTTAAATATGAAACAAACATCAGGATGAAAGT
CAGCCTACATTAGCTCCATGTACAGCCTGCATCTTAGAGAGTAACACAAT
GGGTCAAAGCATGTGAGGCTACACAAATTTCTCATTCACCAGCAGACAAG
GTTCTCACCTTATTTGCTTAAAGGGCTGAGAACGGA
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGAAACTCAGGTAAGCTT
TGAACTTTTGATCCTCTTGCCCCAGCCTCCTAAGTATCTCTGAGATGATA
AGGCCTGTGTCACCAGGTTTGGTAGTTTTCAATTAGCAATAATTGTGCCT
CTGATAAACCTTGTTGGCTATGGTGCTGTTACTTTGCAAATCTGTGGCTG
GAGTAGAGATTCCTGAGAGTTTAGGTAGAGGCTTTTAAGGTAGGAACAGG
AAGAGCCTGCCTACTCTGGAGGTGCAGCCTGCCTGTAGATGCTGGGGAAA
AGCCAGGGCAGAGGAAGGCAGCCAGGGTTGTCTGTTACAGTACCCAGGAG
TAGTGCTGCCCTGACGCGCAGGCGCTTTGAGGAGAGGCTGCTCTCCCACC
ACAGCACAGATGGACCAAGGTTAAAGAACCCGTGCTATACCCGTGAATGT
CCTTCCGTGTTGAGCAGGAGTTGGGGCATTTATTTTCTCTAGTAGTTTGT
TCAGTGTCCTCCTGTGGTTAGTTACCATGATGTCTGGAGATCACCGTAAA
TGCAGGATGAGAAACCCCCTGATCTTTGANGAGAGCACTGTTGAGCTGTT
TGCCTCTATTCCTGCCCTATGGGAGGAGCAGTAAAAAGCCCCTGTTGTGA
TGTAAGAACAGGTATGCATTGCTCTGGGAATCTACGGGAAGAGAATGCCT
TCTTTCTGAAATGTAAATGCCCCTTGTGATGACAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_p23.b1 MSMg01no483_p23.b1 CHROMAT_FILE:
MSMg01no483_p23.b1 PHD_FILE: MSMg01no483_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:24 2005
         (561 letters)



>mm_chr2_181586756_181587716
          Length = 961

 Score =  888 bits (459), Expect = 0.0
 Identities = 514/557 (92%), Gaps = 40/557 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctttccctactggatgtctgacctcctatttcctgcctcagcttattggcc 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 687 gaattctctctttccctactggatgtctgacctcgtatttcctgcctcagcttattggcc 628

                                                                       
Query: 65  ataagcttttatattgacaggtgatacgtagtaagagattctctatacctctcttaagaa 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 ataagcttttatattgacaggtgatatgtagtaagagattctctatacctctcttaagaa 568

                                                                       
Query: 125 agtttcctttcaccctgaacataaccaagcacaacataacatcatcctctacataacttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtttcctttcaccctgaacataaccaagcacaacataacatcatcctctacataacttc 508

                                                                       
Query: 185 cctcatccttccaagctctttgtatgtttcattgtggctggttaccaaatgtcaaggctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctcatccttccaagctctttgtatgtttcattgtggctggttaccaaatgtcaaggctt 448

                                                                       
Query: 245 tgtctatgttacctgacacacaaagtaggacaatttagtaaacaattctccactaattga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtctatgttacctgacacacaaagtaggacaatttagtaaacaattctccactaattga 388

                                                                       
Query: 305 agtatttttggaagaaattaaccaaaatgtatgtgttagaactatttataattcacattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtatttttggaagaaattaaccaaaatgtatgtgttagaactatttataattcacattc 328

                                                                       
Query: 365 atagcctctctctct-t-ttacacacacacacacacacacacacacacacacacacacac 422
           |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atagtctctctctctctcttacacacacacacacacacacacacacacacacacacacac 268

                                                                       
Query: 423 acacacacacacacacacacacatatatacacacacactcagaggtttaccaaatgtttt 482
                                                 ||||||||||||||||||||||
Sbjct: 267 --------------------------------------tcagaggtttaccaaatgtttt 246

                                                                       
Query: 483 aagtgatcagaaaagtatgatggatagttttcatttggaaatcctaaatcctcatcactt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aagtgatcagaaaagtatgatggatagttttcatttggaaatcctaaatcctcatcactt 186

                            
Query: 543 tgaaatcctatttttgt 559
           |||||||||||||||||
Sbjct: 185 tgaaatcctatttttgt 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no483_p23.g1 MSMg01no483_p23.g1 CHROMAT_FILE:
MSMg01no483_p23.g1 PHD_FILE: MSMg01no483_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:24 2005
         (480 letters)



>mm_chr2_181416793_181417672
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgaaactcaggtaagctttgaacttttgatcctcttgccccagcctcctaagtatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgaaactcaggtaagctttgaacttttgatcctcttgccccagcctcctaagtatc 260

                                                                       
Query: 61  tctgagatgataaggcctgtgtcaccaggtttggtagttttcaattagcaataattgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgagatgataaggcctgtgtcaccaggtttggtagttttcaattagcaataattgtgc 320

                                                                       
Query: 121 ctctgataaaccttgttggctatggtgctgttactttgcaaatctgtggctggagtagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgataaaccttgttggctatggtgctgttactttgcaaatctgtggctggagtagag 380

                                                                       
Query: 181 attcctgagagtttaggtagaggcttttaaggtaggaacaggaagagcctgcctactctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcctgagagtttaggtagaggcttttaaggtaggaacaggaagagcctgcctactctg 440

                                                                       
Query: 241 gaggtgcagcctgcctgtagatgctggggaaaagccagggcagaggaaggcagccagggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtgcagcctgcctgtagatgctggggaaaagccagggcagaggaaggcagccagggt 500

                                                                       
Query: 301 tgtctgttacagtacccaggagtagtgctgccctgacgcgcaggcgctttgaggagaggc 360
           |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 501 tgtctgttacagtacccaggagtagtgctgccctgatgggtaggcgctttgaggagaggc 560

                                                                       
Query: 361 tgctctcccaccacagcacagatggaccaaggttaaagaacccgtgctatacccgtgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctctcccaccacagcacagatggaccaaggttaaagaacccgtgctatacccgtgaat 620

                                                                       
Query: 421 gtccttccgtgttgagcaggagttggggcatttattttctctagtagtttgttcagtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccttccgtgttgagcaggagttggggcatttattttctctagtagtttgttcagtgtc 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)