Query= MSMg01no484_h19.b1 MSMg01no484_h19.b1 CHROMAT_FILE:
MSMg01no484_h19.b1 PHD_FILE: MSMg01no484_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:04 2005
(620 letters)
>mm_chr2_61074050_61075070
Length = 1021
Score = 716 bits (370), Expect = 0.0
Identities = 394/402 (98%), Gaps = 2/402 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttcactctcgttattacactttcaaattacagattttctatctagttttttcc 63
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggaatttttcaccctggttattacactttcaaattacagattttctatctagttttttcc 342
Query: 64 ctgcatttatttattttcatacatttcataaatttcacaaatttgatgtagtattaccaa 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgcatttatttattttcataaatttcataaatttcacaaatttgatgtagtattaccaa 282
Query: 124 aaagcttcctttac-ttgttttaaaattctttcatgtaacaaatgacaattgtacgtatt 182
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaagcttcctttactttgttttaaaattctttcatgtaacaaatgacaattgtacgtatt 222
Query: 183 aatggtatataaccagatttttttttcagtactgagaatcggttccagggcctttgagaa 242
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 221 aatggtatataaccaga-ttttttttcagtactaagaatcggttccagggcttttgagaa 163
Query: 243 cgttaggcaagtaatccatcctcaaactgctattctcatgtcagaatgaaatttggataa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgttaggcaagtaatccatcctcaaactgctattctcatgtcagaatgaaatttggataa 103
Query: 303 atatatggactaattaaattaatccaactaattcattaataacatcacacttggcttatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atatatggactaattaaattaatccaactaattcattaataacatcacacttggcttatt 43
Query: 363 ttgtgataagaactttacatttttattctgctagcgattttc 404
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ttgtgataagaactttacatttttattctgctagcgattttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_h19.g1 MSMg01no484_h19.g1 CHROMAT_FILE:
MSMg01no484_h19.g1 PHD_FILE: MSMg01no484_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:04 2005
(660 letters)
>mm_chr2_60937485_60938544
Length = 1060
Score = 1230 bits (636), Expect = 0.0
Identities = 654/660 (99%)
Strand = Plus / Plus
Query: 1 catgcagttgactaaggcccaaatcttaccccttccaggccaccgtcttttccagcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcagttgactaaggcccaaatcttaccccttccaggccaccgtcttttccagcccac 260
Query: 61 gttgatgcttctgggtgaacttgttcttgttcagtgagtgatgctctcaaccaagaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgatgcttctgggtgaacttgttcttgttcagtgagtgatgctctcaaccaagaagca 320
Query: 121 aggccatatcccacacatgtgctctaatagatccaagaatttctccaaactcacattttg 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctgtatcccacacatgtgctctaatagatccaagaatttctccaaactcacattttg 380
Query: 181 acttttaaaaaaccttccaaacaatacagaagtgttatgaaacaaccagcaccatttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttttaaaaaaccttccaaacaatacagaagtgttatgaaacaaccagcaccatttatc 440
Query: 241 ctaactttaataacactgagaaagaatgtagtgaaactcagaaaaaccgagaaattatcc 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ctaactttaataacactgagaaagaatgtagtgaagctcagaaaaaccgagaaattatcc 500
Query: 301 ttttgatcatgctgagaggtgtggttgagccacaaatattttttctactcaccagaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgatcatgctgagaggtgtggttgagccacaaatattttttctactcaccagaaata 560
Query: 361 gataaaaagcagtttaccagcatatagcccagtgtaagcattgtgtataagccagcaatc 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gataaaaagcagtttaccagcatatagcccagtgtaagcattttgtataagccagcaatc 620
Query: 421 ctggcctggccttctgttccagtttctttctgttgctgtgataatatgctcttaccaaag 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctggcctggccttctgttccagtttctttctgttgctgtgataagatgctcttaccaaag 680
Query: 481 gtacctttcaggagggaagggtttagttggcttacacttccaggtcatactccatcatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtacctttcaggagggaagggtttagttggcttacacttccaggtcatactccatcatta 740
Query: 541 agggatattgcatcaggatctcaagcaggaacttgcagcagaaaccatgtaaggacactg 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcgatattgcatcaggatctcaagcaggaacttgcagcagaaaccatgtaaggacactg 800
Query: 601 cttgctggccttctctgtgactttctcacccacggattcttgcttagctacctttcttac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttgctggccttctctgtgactttctcacccacggattcttgcttagctacctttcttac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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