Query= MSMg01no484_k19.b1 MSMg01no484_k19.b1 CHROMAT_FILE:
MSMg01no484_k19.b1 PHD_FILE: MSMg01no484_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:19 2005
(408 letters)
>mm_chr2_180371920_180372727
Length = 808
Score = 646 bits (334), Expect = 0.0
Identities = 334/334 (100%)
Strand = Plus / Minus
Query: 1 tactgggaggtgtgcgccaccactgccctgctgaagttggatttttattatgatgctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tactgggaggtgtgcgccaccactgccctgctgaagttggatttttattatgatgctcaa 275
Query: 61 taataataatcaatttggttacttatgattatttcatgtctgtttttaactcagtaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 taataataatcaatttggttacttatgattatttcatgtctgtttttaactcagtaataa 215
Query: 121 tagtatttaatttatttatttttattttatgtatgttggtattttgcctgcatgtatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tagtatttaatttatttatttttattttatgtatgttggtattttgcctgcatgtatggc 155
Query: 181 tgaatgagggtgtcagattccctggaacaagaattacagacatgtgggttctgggaattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tgaatgagggtgtcagattccctggaacaagaattacagacatgtgggttctgggaattg 95
Query: 241 aacccaggtcctctggaagaacagccagtgctcttacctgctgagccatctctccagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aacccaggtcctctggaagaacagccagtgctcttacctgctgagccatctctccagcac 35
Query: 301 tgaatatttaatgagatagtattgagttattgaa 334
||||||||||||||||||||||||||||||||||
Sbjct: 34 tgaatatttaatgagatagtattgagttattgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_k19.g1 MSMg01no484_k19.g1 CHROMAT_FILE:
MSMg01no484_k19.g1 PHD_FILE: MSMg01no484_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
(586 letters)
>mm_chr2_180197466_180198453
Length = 988
Score = 1071 bits (554), Expect = 0.0
Identities = 579/588 (98%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 1 ttaggtggtggctttcgttttcagggaagaaatcctgtttccttttgtgtggtgctgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggtggtggctttcgttttcagggaagaaatcctgtttccttttgtgtggtgctgatc 260
Query: 61 acaaaactgcggtctgttgcagtatacccaatctgcctgtgtagtcctgtgtggtcccta 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acaaaactgcggtctgttgcagtatacccgatctgcctgtgtagtcctgtgtggtcccta 320
Query: 121 gcagttgtcgtgggatagggaggagagagcacagtgggcgggaggcaaacccgagtttaa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gcagttgtcgtgggatagggaggagagagcacagtggacgggaggcaaacccgagtttaa 380
Query: 181 aggcaaacgcaaacagcactctggtgaccttgaatcttttccttttgattctccctgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaaacgcaaacagcactctggtgaccttgaatcttttccttttgattctccctgtgc 440
Query: 241 ccaaagagtctgctgtcagcttcaaccccaagttctaaggctggtgtacagtatggccat 300
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 441 ccaaagagtctgctgtcagcttctaccccaagttctaaggctggtgcacagtatggccat 500
Query: 301 tctcacccctctatctggccctaccctgttcctct--gtctctcttctgtcctgttccac 358
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tctcacccctctatctggccctaccctgttcctctttgtctctcttctgtcctgttccac 560
Query: 359 tgcagtttgagaaagtggactaaatgtctcggccgcctctactgcacctcacctgctgtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagtttgagaaagtggactaaatgtctcggccgcctctactgcacctcacctgctgtg 620
Query: 419 ctgccaaagccttccccatgaggctggagatgccccagcctgggatgggggacacacttg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgccaaagccttccccatgaggctggagatgccccagcctgggatgggggacacacttg 680
Query: 479 ctttgggaccagggagatgacttacgcagggaagagcttgagaacctgagctggacccca 538
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 681 ctttgggaccagggagatgacttaggcagggaaaagtttgagaacctgagctggacccca 740
Query: 539 ctctctatgtaagaggacattcatggggatacgtgcctgtaatctcag 586
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctctatgtaagaggacattcatggggatacgtgcctgtaatctcag 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 988
Length adjustment: 10
Effective length of query: 576
Effective length of database: 978
Effective search space: 563328
Effective search space used: 563328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
