Query= MSMg01no484_n20.b1 MSMg01no484_n20.b1 CHROMAT_FILE:
MSMg01no484_n20.b1 PHD_FILE: MSMg01no484_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:35 2005
(658 letters)
>mm_chr2_122504012_122505069
Length = 1058
Score = 1210 bits (626), Expect = 0.0
Identities = 650/662 (98%), Gaps = 8/662 (1%)
Strand = Plus / Plus
Query: 1 tttgacttttgtttccagcaggctcctgctccatgcagctgtttcatttccattccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgacttttgtttccagcaggctcctgctccatgcagctgtttcatttccattccatct 260
Query: 61 cggtgatgctccaattgtagatccagtcccttctgttttgtgtagccgtcttttaggatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgatgctccaattgtagatccagtcccttctgttttgtgtagccgtcttttaggatg 320
Query: 121 tgggctactgctatgaccacttagtgtcacagaaggttcactgtactatgcaattacttc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctactgctatgaccactgagtgtcacagaaggttcactgtactatgcaattacttc 380
Query: 181 cttctatcaaagaccagaccgagcaaggatacaacaccccagtggcaaagcaaggttgat 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 cttctatcaaagaccagaccgagcaaggatacaacacctcagtggcaaagcaaggttgat 440
Query: 241 tagagatttt----aggtcaggagaagccttggaacgaatcatggttttgaggaagacac 296
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaga----gcaaaggtcaggagaagccttggaacgaatcatggttttgaggaagacac 496
Query: 297 agggacagcaacacagtgggacctttatttgattctattctggtgctctctccacccctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agggacagcaacacagtgggacctttatttgattctattctggtgctctctccacccctg 556
Query: 357 caaggacttaacacagcaaacttttggctaccatagcagcagcaaccaaacatgcatgca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caaggacttaacacagcaaacttttggctaccatagcagcagcaaccaaacatgcatgca 616
Query: 417 gctttggagagtgctactgaactctagttttccattactttcatgtgttacctacaactt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gctttggagagtgctactgaactctagttttccattactttcatgtgttacctacaactt 676
Query: 477 ggtcatgatttttagctacatcagtcaacaccagatcccttttgagtttcatcttaccag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggtcatgatttttagctacatcagtcaacaccagatcccttttgagtttcatcttaccag 736
Query: 537 tgacaactgtttgttgaaagtgacttatagctcctttgcaactgtaccctttaggacctt 596
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgacatctgtttgttgaaagtgacttatagctcctttgcaactgtaccctttaggacctt 796
Query: 597 aggaaagtcacctaacctcttctggtgaggactgcaatattaattcacaggagcatccta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aggaaagtcacctaacctcttctggtgaggactgcaatattaattcacaggagcatccta 856
Query: 657 gg 658
||
Sbjct: 857 gg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_n20.g1 MSMg01no484_n20.g1 CHROMAT_FILE:
MSMg01no484_n20.g1 PHD_FILE: MSMg01no484_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:35 2005
(622 letters)
>mm_chr2_122635277_122636298
Length = 1022
Score = 1120 bits (579), Expect = 0.0
Identities = 619/647 (95%), Gaps = 28/647 (4%)
Strand = Plus / Minus
Query: 1 ttcagacccaacgccactgtgtttatgtaagttctctgggaaactctggggaaattgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttcagacccaacgccactgtgtttatgtaagttctctgggaaactctggggaaattgttt 586
Query: 61 aaaactctgggtgccatgacagaattaggttaacaagaaatttagtagggaaaaatgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaaactctgggtgccatgacagaattaggttaacaagaaatttagtagggaaaaatgccc 526
Query: 121 tgcaagataaagactgaaggggaagcggggaggactgaacttcagactgtgacgtgggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgcaagataaagactgaaggggaagcggggaggactgaacttcagactgtgacgtgggtg 466
Query: 181 gtatccctgatggaatatagagaaaaggaaaatcttaggttcagccaagtttgtaggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtatccctgatggaatatagagaaaaggaaaatcttaggttcagccaagtttgtaggcct 406
Query: 241 cccagagtcaaaaccacccagcagaggacctagaactggcaggtattagtaacccatagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cccagagtcaaaaccacccagcagaggacctagaactggcaggtattagtaacccatagt 346
Query: 301 gcctgtcacaagctgaaaaagcacaggctgagctcagtgtccctg-agacactcaagggg 359
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 345 gcctgtcacaagctgaaaaagcacaggctgagctcagtgtccctgaag-cactcaagggg 287
Query: 360 aggcacctgggctctagaatcttcatgcagcaggagttctaagcagccctgtgtcagagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aggcacctgggctctagaatcttcatgcagcaggagttctaagcagccctgtgtcagagc 227
Query: 420 tgcgacacagtctttgacacagttct---gtc-------------cagtgactc------ 457
|||||||||||||||||||||||||| ||| |||| |||
Sbjct: 226 tgcgacacagtctttgacacagttctacagtctctagaaagttctcagt--ctctagaaa 169
Query: 458 --agtctctagaaagtagtgccagctgtaagttgaacacaccacggagacaacaagaaag 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gtagtctctagaaagtagtgccagctgtaagttgaacacaccacggagacaacaagaaag 109
Query: 516 ccatcgccccaacaccagcttcttctcccaagtgctacaacttcccattgctgctagtca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ccatcgccccaacaccagcttcttctcccaagtgctacaacttcccattgctgctagtca 49
Query: 576 agagattttctcaaataagtaaatcaacaaccaagttttatttagaa 622
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 agagattttctcaaataagtaaatcaacaaccaagttttatttagaa 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
