BAC Information

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BAC

Clone NameMSMg01-485D02
Chromosome2 (Build37)
Map Location 130,578,485 - 130,746,109
singlet/doubletdoublet
Overlap gene4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn
Upstream geneStk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
Downstream geneLOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485D02.T7 (MSMg01no485_d02.b1)MSMg01-485D02.TJ (MSMg01no485_d02.g1)
ACCAG564696AG564697
length745747
length of high quality
(start - end)		633 (50 - 682)638 (81 - 718)
definitionCHROMAT_FILE: MSMg01no485_d02.b1 PHD_FILE: MSMg01no485_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:03 2005CHROMAT_FILE: MSMg01no485_d02.g1 PHD_FILE: MSMg01no485_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,745,477 - 130,746,109)(130,578,485 - 130,579,096)
sequence
NNNACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGAT
CCGCGGAATTCCAGAACAGTCACAGTTACAAAGTGAGACCTTGACTCAAA
AAACTACATTTGCATAGTTTACGTAGATGTATACAAAGTAACAACAGTAA
TTGGTTAACCCAAGAAAATCTTCAACAAAAAGCCTGATAGACTCAGGAAA
GCAATTTTCAGATGTGTGTGTATGTGTGTGTGTATGTATATATATACTTA
TATACACACATACATACATGTCTATGTATATATGTGTATGTATGTGTGTA
TGTGTATACACACACACACATATATATATACATGCACACACACACACACA
CACACACACACATATATATATATATATATACACACACACACACACAGAGA
TACATTTCATTTAAAGCCAGACATAAAGGCTTTACTATACATATTATAAC
ATCTGTAATATTTACTACTTATAATAGTTATATATAAAAAAATTCAGGAG
TACTAGGTGATAAATTCACAGATGTTCATCTGCAGACTTGAGGATGTAGC
TTTTGGTAGAGTGCTTGCCTAACATGCCTAGCACCAAAACAACAACAACA
ACAACAACAACAAGAAAAACCACGCATGTTGGCTCTCTTAGATACATTTC
TATTACTGTGATAAAATACCATGATGAAGGCAACTTACAGAAGAATGGGT
TGACTTGGGGCTTACGGTGACAGAAGGGAACACAGTCCATGAGGG

NNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCTAATGAACAAAGCTT
CAAAGTCAAGTCAGACATCGGGTGTGCTGGCCCACACCTTTAATTCTAGC
ATCGGGAAGCAGAGGCAGGAGATCGCTGTGAGTTCTAGGCCGGCCTGGTC
TCAAAAACCAAAACAAAATAGAATCCCCAAACAAACAAAACAAAGACACA
ACCACAACAGCTCGGTGGCAGGGCCTGATCAAGTCAATGATTATAACCAT
ATTCTAGATGTTCAAGAATCTGGGAGAACTACATTAGCTTGGTATATAAA
GAATTAAGTTTTAAAAGATTCAAAATGAACTCTTACAGATGAAAAATACA
GAAATAACAACAGACAAGGTTAGTGGCATTGTGCAAGGCACATGTCAGTA
TGAATCTTAGGGGCCACAAAGAGGTCCAGGGGAGGACAGTTTCTAGAACA
AAGGCCGTGTGTGCTGTTCAAGGAGAGATACTGAGTGGTTAGGCACTCTT
GCTCTGCACACACACACACACACACACACACACACACACACACACACACG
CACACACACACACACACACGCACGCATGCATGTACACTCTTTCTGGTCAT
TCCTCTAACCATTTCAAGCTAAAAGCCATTTACACAGTGTCCACATGGGA
TTAAATTGCCTGGAGCCTGCAGTACAGAGGCCGGCTCACAGTGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_d02.b1 MSMg01no485_d02.b1 CHROMAT_FILE:
MSMg01no485_d02.b1 PHD_FILE: MSMg01no485_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:03 2005
         (633 letters)



>mm_chr2_130745079_130746111
          Length = 1033

 Score = 1035 bits (535), Expect = 0.0
 Identities = 604/649 (93%), Gaps = 38/649 (5%)
 Strand = Plus / Minus

                                                                        
Query: 7    gaattccagaacagtcacagttacaaagtgagaccttgactcaaaaaactacatttgcat 66
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gaattccagaacagccagagttacaaagtgagaccttgactcaaaaaactacatttgcat 972

                                                                        
Query: 67   agtttacgtagatgtatacaaagtaacaacagtaattggttaacccaagaaaatcttcaa 126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  agtttacgtagatgtatacaaagtaacaacagtaattggttaacccaagaaaatcttcaa 912

                                                                        
Query: 127  caaaaagcctgatagactcaggaaagcaattttcagatgtgtgtgtatgtgtgtgtgtat 186
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 911  caaaaagcctgatagactcaggaaaacaattttcagatgtgtgtgtatgtgtgtgtgtat 852

                                                                        
Query: 187  gtatatatatacttatatacacacatacatacatgtctatgtatatatgtgtatgtatgt 246
            ||||||||||||||||||||||||||||||||||| |||||||||||||        |||
Sbjct: 851  gtatatatatacttatatacacacatacatacatgcctatgtatatatg--------tgt 800

                                                                        
Query: 247  gtgtatgtgtat--------acacacacacacatatatatatacatgcacacacacacac 298
            ||||||||||||        ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 799  gtgtatgtgtatacacacacacacacacacacacatatatatacatgcacacacacacac 740

                                                                        
Query: 299  acacacacacacac--------------atatatatatatatatatacacacacacacac 344
            ||||||||||||||              ||||||||||||||||||| | ||||||||||
Sbjct: 739  acacacacacacacacacacacatatatatatatatatatatatatatatacacacacac 680

                                                                        
Query: 345  acagagatacatttcatttaaagccagacataaaggctttactatacatattataacatc 404
            ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  ac--agatacatttcatttaaagccagacataaaggctttactatacatattataacatc 622

                                                                        
Query: 405  tgtaatatttactacttataatagttatatataaaaaaattcaggagtactaggtgataa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  tgtaatatttactacttataatagttatatataaaaaaattcaggagtactaggtgataa 562

                                                                        
Query: 465  attcacagatgttcatctgcagacttgaggatgtagcttttggtagagtgcttgcctaac 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  attcacagatgttcatctgcagacttgaggatgtagcttttggtagagtgcttgcctaac 502

                                                                        
Query: 525  atgcctagcaccaaaacaacaacaacaacaacaacaacaagaaaaaccacgcatgttggc 584
            ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 501  atgcctagcaccaaaacaacaacaacaacaacaa------gaaaaaccacgcatgttggc 448

                                                             
Query: 585  tctcttagatacatttctattactgtgataaaataccatgatgaaggca 633
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  tctcttagatacatttctattactgtgataaaataccatgatgaaggca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 162
Number of extensions: 12
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_d02.g1 MSMg01no485_d02.g1 CHROMAT_FILE:
MSMg01no485_d02.g1 PHD_FILE: MSMg01no485_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:03 2005
         (638 letters)



>mm_chr2_130578285_130579322
          Length = 1038

 Score = 1114 bits (576), Expect = 0.0
 Identities = 610/638 (95%), Gaps = 26/638 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtctaatgaacaaagcttcaaagtcaagtcagacatcgggtgtgctggcccacacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtctaatgaacaaagcttcaaagtcaagtcagacatcgggtgtgctggcccacacctt 260

                                                                       
Query: 61  taattctagcatcgggaagcagaggcaggagatcgctgtgagttctaggccggcctggtc 120
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 taattctagcattgggaagcagaggcaggggatcgctgtgagttctaggccggcctggtc 320

                                                                       
Query: 121 tcaaaaaccaaaacaaaatagaatccccaaacaaacaaaacaaagacacaaccacaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaaaccaaaacaaaatagaatccccaaacaaacaaaacaaagacacaaccacaacag 380

                                                                       
Query: 181 ctcggtggcagggcctgatcaagtcaatgattataaccatattctagatgttcaagaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcggtggcagggcctgatcaagtcaatgattataaccatattctagatgttcaagaatc 440

                                                                       
Query: 241 tgggagaactacattagcttggtatataaagaattaagttttaaaagattcaaaatgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggagaactacattagcttggtatataaagaattaagttttaaaagattcaaaatgaac 500

                                                                       
Query: 301 tcttacagatgaaaaatacagaaataacaacagacaaggttagtggcattgtgcaaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttacagatgaaaaatacagaaataacaacagacaaggttagtggcattgtgcaaggca 560

                                                                       
Query: 361 catgtcagtatgaatcttaggggccacaaagaggtccaggggaggacagtttctagaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgtcagtatgaatcttaggggccacaaagaggtccaggggaggacagtttctagaaca 620

                                                                       
Query: 421 aaggccgtgtgtgctgttcaaggagagatactgagtggttaggcactcttgctctgcaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggccgtgtgtgctgttcaaggagagatactgagtggttaggcactcttgctctgcaca 680

                                                                       
Query: 481 cacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacg 540
           |||||||||||||||||||||||||||||||||||||                       
Sbjct: 681 cacacacacacacacacacacacacacacacacacac----------------------- 717

                                                                       
Query: 541 cacgcatgcatgtacactctttctggtcattcctctaaccatttcaagctaaaagccatt 600
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ---gcatgcatgtacactctttctggtcattcctctaaccatttcaagctaaaagccatt 774

                                                 
Query: 601 tacacagtgtccacatgggattaaattgcctggagcct 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tacacagtgtccacatgggattaaattgcctggagcct 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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