BAC Information

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BAC

Clone NameMSMg01-485K14
Chromosome2 (Build37)
Map Location 23,198,671 - 23,198,989
singlet/doubletsinglet
Overlap geneNxph2
Upstream geneMyo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835
Downstream geneLOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485K14.T7 (MSMg01no485_k14.b1)MSMg01-485K14.TJ (MSMg01no485_k14.g1)
ACCAG565053AG565054
length717718
length of high quality
(start - end)
544 (77 - 620)319 (329 - 647)
definitionCHROMAT_FILE: MSMg01no485_k14.b1 PHD_FILE: MSMg01no485_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:41 2005CHROMAT_FILE: MSMg01no485_k14.g1 PHD_FILE: MSMg01no485_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTATTTCCGTACTCCATTTTTTAATAGGGTTATT
TGGTTTTCTGAGTCTTAACTTCTTGAGTTCTTGTGTATACTAGATAATAG
CCCTCTATTGGATTTAGGATAGATAAAGATCTTTTCCCAATCACTTGGTT
GCCTTTTGGTCTTCTTGACAGTATCCTTTGCCTTACAGAAGCTATGCAAT
TTTATGAGGTCCTATTTGTTAATTCCTTCTAGTAGTTTCTGTATGGCTGG
ATTTGTGGTAGATATGGTTTAGATTTGGATTCTTTTGAAGTGTCTTGTTT
TGTCCGTCTATGGTGATTGAGGATTTTCCTCTGTATAATAGTCTAGGTTG
GCATCTGTGGTTTGTTTAAAGGTTGCAAGATAGCTGTCCATGCCCTACTA
GCTTTTAGAGTTTATATTGACACATTGGGTGTAATTCTGATGGGTATGTT
TTTGAATGTTACCTGCCCTCTTTCCCTTACTCATTTTAATATTCTTTCTT
TGTTCTGTAGATTTTGTGTGTTTTGATTATTATTTGTATCACAGAGCACA
GTTCTCCATGCTAATGAGGTATACCTGGCATTGTCTGGCAGTCAAGATTT
AGACCCAGTGGTGTCTCCTTTTCTGGAACCCAAAGCCTCAACTCTACAGC
TTCCTGCATTAAACTTN
GTTTTCGCATGATAGGTGAGGCCTGGNGGCCGCCTGGCTTTTCACACGAG
AGGAACNANANAAGGATTGCGAAAAACGGGGAGAACTAATCTCACTTGCC
TCCTGAATGGGGTATATGAGTTTAAGCACGTGTTCTCAAACTTTAGGATG
ACATTGACCTCAGAAAATTAATAACATTAGAGACAGATCCCAGTGAACTA
AAATAGTGAAGCTCAATAATCTTAATTTTTAGGTTCCTTTTAGAAAGATC
AGTATTTATTTTAGAGACAATGCTTTCAGAAGTAAGTGTCTTGAAGGAGC
ATGGTTCTAATTTGGTTTAGGTAATGNTCTTTAATTGTGCTACACAATCA
TCTGAGGATATCTTTTCCAAAAAATACTTTCTATGGACCTTATTACATGT
AGTTTTCTAAATTCCAGAAGTAATATTTTAGGATATCAAAATTAATGGAA
ATGCTTCTAATAAAGAGTTCTTTTGTTTTAAAAAATCAGAGTGAGTGATT
TTAAAACTTAAGCAGATATTGAGGATAGAAACAGGTTAAGGTGGAATTAT
GTAGCAAGGAAGAAAGGACATTGATCTGTGGATGAGTTTACTTTTGTTCT
TTTTGCGCTGGGAGCCTGCATGTTTTGTGGCTATTTATCTGAGACAGGTA
TCAAGAGCATTTATGAAATGCTGTAGATGTTGCTATTTTCCAAGTCCTTT
GGAACTGAACAAATTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_k14.g1 MSMg01no485_k14.g1 CHROMAT_FILE:
MSMg01no485_k14.g1 PHD_FILE: MSMg01no485_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:41 2005
         (319 letters)



>mm_chr2_23198471_23199189
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaattgtgctacacaatcatctgaggatatcttttccaaaaaatactttctatggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaattgtgctacacaatcatctgaggatatcttttccaaaaaatactttctatggac 260

                                                                       
Query: 61  cttattacatgtagttttctaaattccagaagtaatattttaggatatcaaaattaatgg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatgacatgtagttttctaaattccagaagtaatattttaggatatcaaaattaatgg 320

                                                                       
Query: 121 aaatgcttctaataaagagttcttttgttttaaaaaatcagagtgagtgattttaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgcttctaataaagagttcttttgttttaaaaaatcagagtgagtgattttaaaact 380

                                                                       
Query: 181 taagcagatattgaggatagaaacaggttaaggtggaattatgtagcaaggaagaaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagcagatattgaggatagaaacaggttaaggtggaattatgtagcaaggaagaaagga 440

                                                                       
Query: 241 cattgatctgtggatgagtttacttttgttctttttgcgctgggagcctgcatgttttgt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 cattgatctgtggatgagtttacttttgttctttttgtgctgggagcctgcatgttttgt 500

                              
Query: 301 ggctatttatctgagacag 319
           |||||||||||||||||||
Sbjct: 501 ggctatttatctgagacag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)