Query= MSMg01no485_m15.b1 MSMg01no485_m15.b1 CHROMAT_FILE:
MSMg01no485_m15.b1 PHD_FILE: MSMg01no485_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:52 2005
(315 letters)
>mm_chr2_24328909_24329624
Length = 716
Score = 588 bits (304), Expect = e-172
Identities = 313/316 (99%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 1 tggaatcccagcggtcttagctgtcctggctgacttgggggcagcttcagggactgcgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tggaatcccagcggtcttagctgtcctggctgacttgggggcagcttcagggactgcgac 457
Query: 61 gtggagaagtcccagctcttccctggtgccaccaatgaagctgcccggttctcctgttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtggagaagtcccagctcttccctggtgccaccaatgaagctgcccggttctcctgttct 397
Query: 121 gtcaggt-cctagtgcgcccctttgccacgttctaagggcatggcaaaattacctttagt 179
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 396 gtcaggtccctagtgcgcccctttgccacgttctaagggcagggcaaaattacctttagt 337
Query: 180 caaactagcatatgcatcggccggccccgggagctgggaggttttccagcgaggtctata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 caaactagcatatgcatcggccggccccgggagctgggaggttttccagcgaggtctata 277
Query: 240 acttccctagctaggctccctccgcccctcaatccccccgtgttactctgctttgacctc 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 276 acttccctagctaggctccctccgcccctcaatccccccctgttactctgctttgacctc 217
Query: 300 ctcttgacgagagtgg 315
||||||||||||||||
Sbjct: 216 ctcttgacgagagtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space: 216342
Effective search space used: 216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_m15.g1 MSMg01no485_m15.g1 CHROMAT_FILE:
MSMg01no485_m15.g1 PHD_FILE: MSMg01no485_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:52 2005
(648 letters)
>mm_chr2_24148346_24149393
Length = 1048
Score = 1207 bits (624), Expect = 0.0
Identities = 642/648 (99%)
Strand = Plus / Plus
Query: 1 catttaccctgcagtctccatacagaaacaggccagatggggccagacccagtaacttct 60
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 201 catttaccctgcagtctccatacagaaacaggccagaggggggcagacccagtaacttct 260
Query: 61 agctgagccctaccttgcttaaaacctgccatctgtggtcccctcactgtctgaattgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgagccctaccttgcttaaaacctgccatctgtggtcccctcactgtctgaattgca 320
Query: 121 ttctgtcttacctcccagagaaggtctgtatccttcctaaccgaggcctagaccgctcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtcttacctcccagagaaggtctgtatccttcctaaccgaggcctagaccgctcca 380
Query: 181 aggtccccatcttcctggggatgcagggaggaagttgctgcctggcgtgtgtaaagacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtccccatcttcctggggatgcagggaggaagttgctgcctggcgtgtgtaaagacaa 440
Query: 241 gagagttacctctcctgcagctggaggtgagacacccctcctcattgcagtcagtactgc 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagggacctctcctgcagctggaggtgagacacccctcctcattgcagtcagtactgc 500
Query: 301 cactggaacagagtgacatctttgaacccacatgtcccctctcttgtttcccatctatct 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactggaacatagtgacatctttgaacccacatgtcccctctcttgtttcccatctatct 560
Query: 361 ctctttgcctccagctgagggactctagcctttggggatgtacagaaagaacatggcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctttgcctccagctgagggactctagcctttggggatgtacagaaagaacatggcttc 620
Query: 421 ggaaaactcttccctattgagtccttctttggccaagcctctgaggcgctaagggctgac 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ggaaaactcttccctattgagtccttctttggccaagcctctgaggcactaagggctgac 680
Query: 481 gtcccaaccaaacactcatttcatctcacagctgtctccctttccccacaggatgtgaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcccaaccaaacactcatttcatctcacagctgtctccctttccccacaggatgtgaac 740
Query: 541 atcgaggacctatacaagggaggtgaacaaaccacccgtttcacctttttccagagaagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcgaggacctatacaagggaggtgaacaaaccacccgtttcacctttttccagagaagc 800
Query: 601 ttgggatctgccttcaggcttgaggctgctgcctgccctggctggttt 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgggatctgccttcaggcttgaggctgctgcctgccctggctggttt 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
