Query= MSMg01no485_m19.b1 MSMg01no485_m19.b1 CHROMAT_FILE:
MSMg01no485_m19.b1 PHD_FILE: MSMg01no485_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:53 2005
(338 letters)
>mm_chr2_122705264_122706004
Length = 741
Score = 601 bits (311), Expect = e-176
Identities = 333/341 (97%), Gaps = 3/341 (0%)
Strand = Plus / Plus
Query: 1 tccttgcagcacatccttgagaccacatcttgcctattccctttctttagtaccccttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttgcagcacatccttgagaccacatcttgcctattccctttctttagtaccccttcc 260
Query: 61 actctggttcctattaggatatgaaaaacagcctccagcccctgcttttgctgccatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctggttcctattaggatatgaaaaacagcctccagcccctgcttttgctgccatgat 320
Query: 121 gctctcaagagaacaggatcaactgaccatggaaattatcaaaagtggggggtccttctt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctcaagtgaacaggatcaactgaccatggaaattatcaaaagtggggggtccttctt 380
Query: 181 ccattgcaggaaagaaagtagttttggtgagttattttccaactatgataataataat-a 239
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ccattgcaagaaagaaagtagctttggtgagttattttccaactatgataataataatta 440
Query: 240 aaaaaatacagacaatggctatcagaaaataaggttgttactgtgagaaatcctgacaat 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 aaaaaatacagacaatggctatcagaaaataaggttgttactgtgagaaatcctgataat 500
Query: 300 --gattgttatatcttcagaattggtttacaagaatgatgt 338
||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 atgattgttatgtcttcagaattggtttacaagaatgatgt 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 741
Length adjustment: 9
Effective length of query: 329
Effective length of database: 732
Effective search space: 240828
Effective search space used: 240828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_m19.g1 MSMg01no485_m19.g1 CHROMAT_FILE:
MSMg01no485_m19.g1 PHD_FILE: MSMg01no485_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:53 2005
(575 letters)
>mm_chrX_50090505_50091479
Length = 975
Score = 1091 bits (564), Expect = 0.0
Identities = 570/572 (99%)
Strand = Plus / Minus
Query: 1 agaccatttcatatgtgtgaggggacaagtaagctaggatcagatcacacaattctgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agaccatttcatatgtgtgaggggacaagtaagctaggatcagatcacacaattctgtcc 513
Query: 61 caatgagacagaatgaaaggttcttagatttcagtttggtaaggtctacctgccagcagt 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 512 caatgagacagaatgaaaggttcttaggtttcagtttggtaaggtctacctgccagcagt 453
Query: 121 gaagtgcccatttggccaattgggccagaggccagtaggctattttctaagtgggagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaagtgcccatttggccaattgggccagaggccagtaggctattttctaagtgggagaca 393
Query: 181 agggtttgattcacgacaggaggagggccaaataaatataggctaaggtatctctcacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agggtttgattcacgacaggaggagggccaaataaatataggctaaggtatctctcacca 333
Query: 241 acaaattcatggacatatttaataagattttgcccaccatctcaacaagagagcttctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acaaattcatggacatatttaataagattttgcccaccatctcaacaagagagcttctaa 273
Query: 301 acttttctataattccaaaagccatttgcaagaatatacagcggaaaatggttacataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acttttctataattccaaaagccatttgcaagaatatacagcggaaaatggttacataga 213
Query: 361 cactggaggaggtgtcttaattggcttgtgactgctgtggtaaggaacaccatatccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cactggaggaggtgtcttaattggcttgtgactgctgtggtaaggaacaccatatccaaa 153
Query: 421 agcaagttgggaaagaaatggtttatttaactttatagtttacaatcctttatgaaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 agcaagttgggaaagaaatggtttatttaactttatagtttacaatcctttatgaaagga 93
Query: 481 agtctgtgcagaaacctggaggcaggagctgatgcagaagtcatggaggagtgctgctta 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 92 agtctgtgcagaaacctggaggcaggagctgatgcataagtcatggaggagtgctgctta 33
Query: 541 ctgactggcttgctctctacaacttgctcatc 572
||||||||||||||||||||||||||||||||
Sbjct: 32 ctgactggcttgctctctacaacttgctcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
