Query= MSMg01no486_b23.b1 MSMg01no486_b23.b1 CHROMAT_FILE:
MSMg01no486_b23.b1 PHD_FILE: MSMg01no486_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:20 2005
(590 letters)
>mm_chr2_165175810_165176799
Length = 990
Score = 1004 bits (519), Expect = 0.0
Identities = 562/587 (95%), Gaps = 18/587 (3%)
Strand = Plus / Minus
Query: 5 gaattcaacttctgttcagctttgtacaggggaaatgtagactttaaatatcctctttat 64
||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct: 968 gaattcaacttctgtggagttttgtacagggggaatgtagactttaaatatcctctttat 909
Query: 65 ggcctgggcttcctatggatggtgtaggttaggggtggagagagacagcctgagtatcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ggcctgggcttcctatggatggtgtaggttaggggtggagagagacagcctgagtatcag 849
Query: 125 cccttacttatcttaggccatatggtgctgctgtaacaaaatacccgaggctgatcagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 848 cccttacttatcttaggccatatggtgctgctgtaacaaaatacccgaggctggtcagtt 789
Query: 185 tacattgaagacaaatttgtttctcacaatctgggaggctaagtccaagaccaaggggct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tacattgaagacaaatttgtttctcacaatctgggaggctaagtccaagaccaaggggct 729
Query: 245 agaatctggtgaggatcttatctttcatctcctagcagtggacagtaaaaggaggggaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agaatctggtgaggatcttatctttcatctcctagcagtggacagtaaaaggaggggaag 669
Query: 305 gggaggggagatgggcaaagcatgggagcaaagcccagagcttttggcattggtgttaat 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gggaggggagatgggcaaaacatgggagcaaagcccagagcttttggcattggtgttaat 609
Query: 365 ctagcccttatgcccagaacacctccccctgttgcattcggattaactttccaacacaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctagcccttatgcccagaacacctccccctgttgcattcggattaactttccaacacaga 549
Query: 425 gatttgaggagatgcggtcatcgtaaccctgtaggccgatgacacgtttatcaacagtat 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gatttgaggagatgcagtcatcgtaaccctgtaggccgatgacacgtttatcaacagtat 489
Query: 485 ccatatgtactcagcaaagtctctctctctctctctctctctctctctctc-tctctctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 488 ccatatgtactcagcaaagtctctctctctctctctctctctctctctctcat------- 436
Query: 544 tctctctctcacacacacacacacacacacacacacacacacacaca 590
|||||||||||||||||||||||||||||||||||||
Sbjct: 435 ----------acacacacacacacacacacacacacacacacacaca 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_b23.g1 MSMg01no486_b23.g1 CHROMAT_FILE:
MSMg01no486_b23.g1 PHD_FILE: MSMg01no486_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:20 2005
(616 letters)
>mm_chr2_165086969_165087983
Length = 1015
Score = 1122 bits (580), Expect = 0.0
Identities = 607/616 (98%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 1 cctcatctcagcaactgaaacagaggtataaggctagagtataatcagaagtgggtggca 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcatctcagcaaccgaaacagaggtataaggctagagtataatcagaagtgggtggca 260
Query: 61 atggggctggggatgtagcttggctggtggaatgcttgcccagcaccacatgaaccgagt 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 atggggctggggatgtagcttggctggcggaatgcttgcccagcaccacatgaaccgagt 320
Query: 121 ttggtgacacatgcctgtaatctcagcactcaagcagtaaaggcagggagattagaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtgacacatgcctgtaatctcagcactcaagcagtaaaggcagggagattagaagtt 380
Query: 181 caagatcacctttgatctatattgtgagttcagggccatcctggtctatctgacaggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagatcacctttgatctatattgtgagttcagggccatcctggtctatctgacaggtgg 440
Query: 241 ctggtatggatctcgcctgactccagaaggcagctttctccctgactcccccaggtaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtatggatctcgcctgactccagaaggcagctttctccctgactcccccaggtaact 500
Query: 301 gtgagatctgggtcccaaacacccggcaccagtctgggatagctgagctggcttatccgt 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 gtgagatctgggtcccaaacacccggcaccagtctgggctagctgagctggcttatccgt 560
Query: 361 ccttgtctccctgatcccacacacattagctctctaccgtagctgctgctgggccattcc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgtctccctgatcccacacacattagctctctaccgtagctgctgctgggccattcc 620
Query: 421 taaggcacgctgctagcctctggcctctgcttctccttgtccctggcacactttaccatc 480
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaggcgcgctgctagcctctggcctctgcttctccttgtccctggcacactttaccatc 680
Query: 481 acagagatgctggaagctgatgacagcactctaggtctagcttctccaaggtccccgctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 acagagatgctggaagctgatgacagcactctaggtctagcttctccaaggtccccg-tt 739
Query: 541 aacgtccagggaggccacgaggacagagggcagctgggagccaagtagctgctgacatgc 600
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 740 aacgtccagggaggccacaaggacagagggcagctgggagccaagtagctgctgacatcc 799
Query: 601 acaattgatgctcaga 616
||||||||||||||||
Sbjct: 800 acaattgatgctcaga 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
