NNNNNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTCTCCTTTCACTGAGCTACAGACAGTTATAAGCT
GACATGTGGGTGCTGAGAATCAAACCTAGGTCCTCTTTAAGAACAATGAG
TAAGTACCCTTAACCATAGAACCATCTGTCTGGCCCCTGGTATATATTCC
TATGAGAATTTCTAATGTGGTCTTCCTTGAAAATGTAAAACACTATCTAC
ATGACATATTATTGTTCTCTTGGATCAGATCAGCCAAAGCCAGATGCATA
GGTACTACATAACCCCCAGCCTGTACTACAAACATAGCTTGAGGTTTCTC
TGAGAAATTATTTATGTGTTCTGTCTTTTCTGTTCACAAAAACATCAGAA
GTCTCCCAATTGCTCCATCCAGAAAGTAGACCTTCTCTCTCTGTTTTTTT
TTTTTTTTTTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTTCT
AGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATACACCTGC
CTCTGCCTCCCAAGTGCTGGGATTACAGGCATGCGCCACCACCGCCTGGC
TGAGCTTCTCTCTTAATAAATAATATGGTGATACTTCTTGTCTTAGGGTT
TTATTGCTGTGAAGAGACACCATAACTGCAACAACTCTTCTAAAGAAAGA
CATTTAGTTGGGGGCTTACAGTTTCAGAGGTTTAGT

TGGGTCGATGATAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAGGAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGAATGTGGAGAAAG
AGGGACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGACTGGCAGTTCCTCAGAAAATTGGACATAGAAGATCCAGCA
ATACCTCTCCTGGGCATATACCCAGATGATGTTCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAGAGAACCCAGATGCCCCTCAATAGAGGAATGGATACAGAAAATGTGG
TACATTTACACAATGGAGTAAAAACAATGAATTTATGAAATTCTTAGGCA
AACGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAA
AAGAACTCACATGATATGCACTCACTGATAAGTGGATATTGGCCCAGAAA
CTTAGAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAGGAA
GGAAGATCCAAGTGTGGATACGTCGTTCCTATTAATCAGTT

Query= MSMg01no486_c02.b1 MSMg01no486_c02.b1 CHROMAT_FILE:
MSMg01no486_c02.b1 PHD_FILE: MSMg01no486_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:20 2005
         (569 letters)



>mm_chr2_73511803_73512771
          Length = 969

 Score = 1021 bits (528), Expect = 0.0
 Identities = 554/566 (97%), Gaps = 7/566 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattctcctttcactgagctacagacagttataagctgacatgtgggtgctgag 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggaattcattctcctgaaactgagctacagacagttataagctgacatgtgggtgctgag 670

                                                                       
Query: 64  aatcaaacctaggtcctctttaagaacaatgagtaagtacccttaaccatagaaccatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aatcaaacctaggtcctctttaagaacaatgagtaagtacccttaaccatagaaccatct 610

                                                                       
Query: 124 gtctggcccctggtatatattcctatgagaatttctaatgtggtcttccttgaaaatgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtctggcccctggtatatattcctatgagaatttctaatgtggtcttccttgaaaatgta 550

                                                                       
Query: 184 aaacactatctacatgacatattattgttctcttggatcagatcagccaaagccagatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaacactatctacatgacatattattgttctcttggatcagatcagccaaagccagatgc 490

                                                                       
Query: 244 ataggtactacataacccccagcctgtactacaaacatagcttgaggtttctctgagaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ataggtactacataacccccagcctgtactacaaacatagcttgaggtttctctgagaaa 430

                                                                       
Query: 304 ttatttatgtgttctgtcttttctgttcacaaaaacatcagaagtctcccaattgctcca 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttatttctgtgttctgtcttttctgttcacaaaaacatcagaagtctcccaattgctcca 370

                                                                       
Query: 364 tccagaaagtagaccttctctctctgttttttttttttttttttttccgagacagggttt 423
           |||||||||||||||||||||||  ||||||||||||||||     ||||||||||||||
Sbjct: 369 tccagaaagtagaccttctctct--gttttttttttttttt-----ccgagacagggttt 317

                                                                       
Query: 424 ctctgtatagccctggctgttctagaactcactttgtagaccaggctggcctcgaactca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctctgtatagccctggctgttctagaactcactttgtagaccaggctggcctcgaactca 257

                                                                       
Query: 484 gaaatacacctgcctctgcctcccaagtgctgggattacaggcatgcgccaccaccgcct 543
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaaatccacctgcctctgcctcccaagtgctgggattacaggcatgcgccaccaccgcct 197

                                     
Query: 544 ggctgagcttctctcttaataaataa 569
           ||||||||||||||||||||||||||
Sbjct: 196 ggctgagcttctctcttaataaataa 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)