BAC Information

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BAC

Clone NameMSMg01-486C05
Chromosome2 (Build37)
Map Location 141,216,617 - 141,289,421
singlet/doubletdoublet
Overlap genenone
Upstream gene2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486C05.T7 (MSMg01no486_c05.b1)MSMg01-486C05.TJ (MSMg01no486_c05.g1)
ACCAG565412AG565413
length705752
length of high quality
(start - end)		332 (84 - 415)657 (79 - 735)
definitionCHROMAT_FILE: MSMg01no486_c05.b1 PHD_FILE: MSMg01no486_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:21 2005CHROMAT_FILE: MSMg01no486_c05.g1 PHD_FILE: MSMg01no486_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,216,617 - 141,216,948)(141,288,841 - 141,289,421)
sequence
TGTTNTAGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCX
XXXXXXXXXXXXXXXXXXXXACACTTTCCGAGATCTTTGTTCCAAATCCT
ACTGTGAGAGAGTTGAAACCAAGACAGGAATCTATACCAGATGGACAGAT
TGAAAACTTGAAAGGTGAAATCAGATTGCAAACAACAATGCTTTGGTATT
AGGAAGAGTTAAGACCTAGATAAAGGAAAACCGATTTTCTTCCTCTCAAC
TCAGTGACTTAGAAAAGGGTCTGGGAAATGCTTCTCACTTTCTGGGTTAG
TCCTTTAGAAAGGACAGAAAAACACAAAGTCAGTCCTGCAACCGCAGTGC
TTTAAAGCCAAGTCAGTGGAAATGGAGCCCTTGGCACTCAGAGATGGTAC
CTGGCTCTCTGTGTTTCCCACCATGCTACAGTGGGGCTTTGTTGAAAATA
GGTGGTCTTTTTCAGAAATCACTGCTGCCTGGGTGTTGAAAAAATGGAAA
AGGCGGCTGAAAAACCAAAAGGAATTTTTTAAACCTTCCCCAATAAGGGG
AAAAGGGAAATTGGGGCGGAAAAAAAAAGTGTCCGCGGGAAAATTTTGCC
CGGGGGAAACAAAAGAAAATATTCCTGTGTTTTTTTGTCCCCAACAAAAC
TTTTTTTGGGGGGGGGGGGGGGGGTTTTTTTCCCCCCCCCCCAACGGGGG
GGGGG

CCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATTCAAACATTACAACTAT
ATAAGAACACTATTCTTTGGAATGATCAGCGATAGATAGCTCCAGCGATA
GATAGTTCATTCTAAAAGTCTCCAATGAGTGCTTTTTATTAGTGTATACT
TTTAGTTCTTTAAAAAAAATCCTTGACAGATTATGTTAACTTAAAAAGCT
CTTAAATTATAAATGCTACTGGTATTATTTTGTCACAAATGGAAACATTG
ATATGAAGAAAGCTAATAGAAAGATTTTTAGAGTGTCAAAACTACAAAAT
TATATACTTGTATACAATTAGTATAATTTTCCTTTTTACTTAATTATATT
GTATTTAATAATCTAAAATTATACCACTTAAGTGCAAAACTAAAAATTAA
GAAGTTGTGATTTTTAAAAATTTTAATATACAGGCTTATGCTACAGCAGT
GAAGTGAGGAAATATGATTGATAGTGATATTCTCATAATTGGACTATGGA
GTAACCCAATGCTGGTAGGGAAGCTTATAGAATTCATTATGAAATGAAAA
ATAACATATTTTAACCTAAATGTTATGCTTCATGATACCTGTTGATTAGA
AAGATAAAGGTAATGAATGAAGATTGATTTAATGCCATGGATTTATAATT
TAAGTTTATGGAGGAGAGAAAGAGTAATATGCAGGATAATGTGGGACTCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_c05.b1 MSMg01no486_c05.b1 CHROMAT_FILE:
MSMg01no486_c05.b1 PHD_FILE: MSMg01no486_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:21 2005
         (332 letters)



>mm_chr2_141216417_141217148
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgttccaaatcctactgtgagagagttgaaaccaagacaggaatctataccagatg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctttgttccaaatcctactgtgagagagttgaaaccaagacagaaatctataccagatg 260

                                                                       
Query: 61  gacagattgaaaacttgaaaggtgaaatcagattgcaaacaacaatgctttggtattagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagattgaaaacttgaaaggtgaaatcagattgcaaacaacaatgctttggtattagg 320

                                                                       
Query: 121 aagagttaagacctagataaaggaaaaccgattttcttcctctcaactcagtgacttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagttaagacctagataaaggaaaaccgattttcttcctctcaactcagtgacttaga 380

                                                                       
Query: 181 aaagggtctgggaaatgcttctcactttctgggttagtcctttagaaaggacagaaaaac 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggtctgggaaatgcttctcagtttctgggttagtcctttagaaaggacagaaaaac 440

                                                                       
Query: 241 acaaagtcagtcctgcaaccgcagtgctttaaagccaagtcagtggaaatggagcccttg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaagtcagttctgcaaccgcagtgctttaaagccaagtcagtggaaatggagcccttg 500

                                           
Query: 301 gcactcagagatggtacctggctctctgtgtt 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 gcactcagagatggtacctggctctctgtgtt 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_c05.g1 MSMg01no486_c05.g1 CHROMAT_FILE:
MSMg01no486_c05.g1 PHD_FILE: MSMg01no486_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:21 2005
         (657 letters)



>mm_chr2_141288841_141289897
          Length = 1057

 Score = 1108 bits (573), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacattcaaacattacaactatataagaacactattctttggaatgatcagcgatagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aacattcaaacattacaactatataagaacactattctttggaatgatcagcgatagata 522

                                                                       
Query: 61  gctccagcgatagatagttcattctaaaagtctccaatgagtgctttttattagtgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gctccagcgatagatagttcattctaaaagtctccaatgagtgctttttattagtgtata 462

                                                                       
Query: 121 cttttagttctttaaaaaaaatccttgacagattatgttaacttaaaaagctcttaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cttttagttctttaaaaaaaatccttgacagattatgttaacttaaaaagctcttaaatt 402

                                                                       
Query: 181 ataaatgctactggtattattttgtcacaaatggaaacattgatatgaagaaagctaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ataaatgctactggtattattttgtcacaaatggaaacattgatatgaagaaagctaata 342

                                                                       
Query: 241 gaaagatttttagagtgtcaaaactacaaaattatatacttgtatacaattagtataatt 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 gaaagatttttagagtgtcaaaactacgaaattatatacttgtatacaattagtataatt 282

                                                                       
Query: 301 ttcctttttacttaattatattgtatttaataatctaaaattataccacttaagtgcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttcctttttacttaattatattgtatttaataatctaaaattataccacttaagtgcaaa 222

                                                                       
Query: 361 actaaaaattaagaagttgtgatttttaaaaattttaatatacaggcttatgctacagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 actaaaaattaagaagttgtgatttttaaaaattttaatatacaggcttatgctacagca 162

                                                                       
Query: 421 gtgaagtgaggaaatatgattgatagtgatattctcataattggactatggagtaaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gtgaagtgaggaaatatgattgatagtgatattctcataattggactatggagtaaccca 102

                                                                       
Query: 481 atgctggtagggaagcttatagaattcattatgaaatgaaaaataacatattttaaccta 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 101 atgctggtagggaagcttatagaattcattatgaaatcaaaaataacatattttaaccta 42

                                                    
Query: 541 aatgttatgcttcatgatacctgttgattagaaagataaag 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  aatgttatgcttcatgatacctgttgattagaaagataaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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