BAC Information

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BAC

Clone NameMSMg01-486E09
Chromosome2 (Build37)
Map Location 157,990,206 - 158,146,166
singlet/doubletdoublet
Overlap geneD630003M21Rik, Bpi, Lbp
Upstream geneRbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2
Downstream gene9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486E09.T7 (MSMg01no486_e09.b1)MSMg01-486E09.TJ (MSMg01no486_e09.g1)
ACCAG565515AG565516
length728738
length of high quality
(start - end)		511 (80 - 590)217 (322 - 538)
definitionCHROMAT_FILE: MSMg01no486_e09.b1 PHD_FILE: MSMg01no486_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:32 2005CHROMAT_FILE: MSMg01no486_e09.g1 PHD_FILE: MSMg01no486_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,990,206 - 157,990,716)(158,145,951 - 158,146,166)
sequence
NTGGCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATGGC
GCGGAATCAGGATATTTCCTTTAGACGGGAGACACATCACAGACTTCTCT
GTCTTAATTTTTAGGTTACTGCTCACAGTAATGGGTCTCAACATAGCACT
TCTGCACATGCGCCTTTATGCTTTGTTCTAATGCCCCCCTCCCGTGATAC
CCCTTGATCAACAGAGCTTGTACTGACTTTAGATGGCTGTGGGGAGTGCC
ACCATCTTGCCGGTGAGCACTTGCTGGTCTGACTTTTGACCTCCTCTCCC
TATCCCGGGCTCTCTCTGTTCTTTTCGATGCTCAATGGTTTTTATTATAC
AAGCCGTGGACTTTCATTAAATTTGTTCCTGAGTATTTTATTCTTCTGAC
TGCTGCCAGAACTGAAAATTGCTTTCTTAATTTCATTTCAGACCGTTCAC
CGCCAGGGTGTAGAAATACCATTGATTTTGTACATTGATCTTGTGTCCCT
CAACCTTACCCAAGTGGCTCATTAGTTCTAATAATGTCCTGCGGATCTAT
TCCCGCCTCCCTGTATAGGCTGACAGCATCTGCCAAAAGAGATATTTTTG
GTATCTTTGTTTGTGTTTTGCTCGTTGAGACTGGGTGTGTAGCCCAAGCT
GGACTTGAGCTAGAACCTTTCTGCTTTAGCCTCGCCCATGCTTGGATCCC
AAAGATGCTCCTTCATTCTTGCCCAGGT

CCATGAAATGGGTAGCCGGGNGGCCGCCCGTTCAAATCAGGTGGTGAACT
ATAGAAGTGCAAAAAAAGGGGGGAANGAGAAAAAATGAGTAAGGGGCTAG
GTCTAGACTATAACCCCAAACAGAGACACACAAACAAATTTGGCCTTGAG
TTTTCTGGTGACCCAAGAAACAGATAGAAATTATGCTAAGATATTTTTCA
GGTCTTGATATTTGCTTAGCTATAACTCACTATTCTACTGGAATTATTAA
CAGAATGCATGGGAGGATGAGCCATGCTGTCCCAGGAGCAGGGTGAAGCC
CACATTCTTATTATTGCTTCTGTGATGGAAAAGTTCAGGTACCCAGCCTG
GTGATAAACCCGGCTTGCTATGTTGAAGGCATGATCTGAGATGGCAAAGT
AGACCATTTGCTTACTGTCCTCAGGTAGGCTCATGGTCGGAGTGGGGGTA
GCAACTGGAGAGCGGTGATTCCGATTAAAAATTTCACCCTGGAGAGAGAA
ATGGGGACAGTTGGACTGTTTAAAGACTATCCCATGGTCAGCCATTGAAC
TCAGGGGTTTCCTACTTGGTTGATGACGGGCACGGTATTTGGAATACCAT
CCTAAACTGTCCCTCTAATGGTGGACTCCTTGAGGCACAGAGTTTCTTAC
TGCATAAGGGCTCTGGGCGTGCTTGCTTTCTGGAAACACCAGGGTGGGCT
GTGGCCAATCCTACCCAGTTCCCACATTCTGGGAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_e09.b1 MSMg01no486_e09.b1 CHROMAT_FILE:
MSMg01no486_e09.b1 PHD_FILE: MSMg01no486_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:32 2005
         (511 letters)



>mm_chr2_157990006_157990916
          Length = 911

 Score =  849 bits (439), Expect = 0.0
 Identities = 493/511 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacacatcacagacttctctgtcttaatttttaggttactgctcacagtaatgggtctc 60
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 201 agacacatcacagacttctctgtcttaattcttaggttactgctcagagtaatgggtctc 260

                                                                       
Query: 61  aacatagcacttctgcacatgcgcctttatgctttgttctaatgcccccctcccgtgata 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 aacacagcacttctgcacatgcgcctttatgctttgttctaatgcccccctcccgtgatg 320

                                                                       
Query: 121 ccccttgatcaacagagcttgtactgactttagatggctgtggggagtgccaccatcttg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccttgatcaacagagcttgtattgactttagatggctgtggggagtgccaccatcttg 380

                                                                       
Query: 181 ccggtgagcacttgctggtctgacttttgacctcctctccctatcccgggctctctctgt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccggtgagcacctgctggtctgacttttgacctcctctccctatcccgggctctctctgt 440

                                                                       
Query: 241 tcttttcgatgctcaatggtttttattatacaagccgtggactttcattaaatttgttcc 300
           |||   |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tctcagcgatgctctatggtttttattatacaagccatggactttcattaaatttgttcc 500

                                                                       
Query: 301 tgagtattttattcttctgactgctgccagaactgaaaattgctttcttaatttcatttc 360
           ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 501 tgagtattttattcttctggctgctgccggaactaaaaattgctttcttaatttcatttc 560

                                                                       
Query: 361 agaccgttcaccgccagggtgtagaaataccattgattttgtacattgatcttgtgtccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaccgttcaccgccagggtgtagaaataccattgattttgtacattgatcttgtgtccc 620

                                                                       
Query: 421 tcaaccttacccaagtggctcattagttctaataatgtcctgcggatctattcccgcctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 621 tcaaccttacccaagtggctcattagttctaataatgtcctgcggatctcttcccgcttc 680

                                          
Query: 481 cctgtataggctgacagcatctgccaaaaga 511
           |||||||| ||||||||||||||| ||||||
Sbjct: 681 cctgtataagctgacagcatctgcaaaaaga 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_e09.g1 MSMg01no486_e09.g1 CHROMAT_FILE:
MSMg01no486_e09.g1 PHD_FILE: MSMg01no486_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:32 2005
         (217 letters)



>mm_chr2_158145751_158146367
          Length = 617

 Score =  379 bits (196), Expect = e-110
 Identities = 211/216 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgatggaaaagttcaggtacccagcctggtgataaacccggcttgctatgttgaaggca 60
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 416 gtgatggaaaaattcaggtacccagcctggtgataaacccggctggctatgttgaaggca 357

                                                                       
Query: 61  tgatctgagatggcaaagtagaccatttgcttactgtcctcaggtaggctcatggtcgga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taatctgagatggcaaagtagaccatttgcttactgtcctcaggtaggctcatggtcgga 297

                                                                       
Query: 121 gtgggggtagcaactggagagcggtgattccgattaaaaatttcaccctggagagagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtgggggtagcaactggagagcggtgattccgattaaaaatttcaccctggagagagaaa 237

                                               
Query: 181 tggggacagttggactgtttaaagactatcccatgg 216
           |||| ||||||||||||||||||| |||||||||||
Sbjct: 236 tgggaacagttggactgtttaaagtctatcccatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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