Query= MSMg01no486_h21.b1 MSMg01no486_h21.b1 CHROMAT_FILE:
MSMg01no486_h21.b1 PHD_FILE: MSMg01no486_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:49 2005
(603 letters)
>mm_chr2_122263418_122264420
Length = 1003
Score = 1141 bits (590), Expect = 0.0
Identities = 599/602 (99%)
Strand = Plus / Plus
Query: 2 gaattctcacctaattgctaccgaatgcctgagaagcacctgaaaaaatgttcagcatcc 61
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctcacctaagggataccgaatgcctgagaagcacctgaaaaaatgttcagcatcc 261
Query: 62 ttaatcatcagggaaatgcaaatcaaaacaaccctgagattccatctcacaccagtcaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaatcatcagggaaatgcaaatcaaaacaaccctgagattccatctcacaccagtcaga 321
Query: 122 atggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagagga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagagga 381
Query: 182 atactcttccattgttgctgggattgcaaggttatacaaccactctgaaaatcagtctgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atactcttccattgttgctgggattgcaaggttatacaaccactctgaaaatcagtctgg 441
Query: 242 cggatcctcagaaaattggacatagtactacgggaggatcccacaatacctctgaacctc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cggatcctcagaaaattggacatagtactacgggaggatcccacaatacctctgaacctc 501
Query: 302 agctctccctcaaggtggatcctgtcttccaacctttatatatgtacatttatgtagaag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agctctccctcaaggtggatcctgtcttccaacctttatatatgtacatttatgtagaag 561
Query: 362 taactgtgtaggtcccaggaaactagaaaggattacatgataaaggggaaaacggaatct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taactgtgtaggtcccaggaaactagaaaggattacatgataaaggggaaaacggaatct 621
Query: 422 ttagtggaagtagaatgtctgtgattgaaaggggaatgctgggagtggagaggtgtgagg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttagtggaagtagaatgtctgtgattgaaaggggaatgctgggagtggagaggtgtgagg 681
Query: 482 aagtgtggccaggacacagaggagaggagtcaacacaaactaaggatgcttgaaaacacc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagtgtggccaggacacagaggagaggagtcaacacaaactaaggatgcttgaaaacacc 741
Query: 542 acacggaaacatgagttgtcataggggaacaaacataaagtaaacagtttaaatagacga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acacggaaacatgagttgtcataggggaacaaacataaagtaaacagtttaaatagacga 801
Query: 602 ac 603
||
Sbjct: 802 ac 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_h21.g1 MSMg01no486_h21.g1 CHROMAT_FILE:
MSMg01no486_h21.g1 PHD_FILE: MSMg01no486_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:49 2005
(590 letters)
>mm_chr2_122398814_122399803
Length = 990
Score = 1027 bits (531), Expect = 0.0
Identities = 573/587 (97%), Gaps = 2/587 (0%)
Strand = Plus / Minus
Query: 1 tagaatatgatggaaattcccctggggatctcatgctcacaagggaccaaagtaaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tagaatatgatggaaattcccctggggatctcatgctcacaagggaccaaagtaaagatg 727
Query: 61 taagaccagcagggaaactcttgcacaagctccagtagctggtaccctggaggggttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 taagaccagcagggaaactcttgcacaagctccagtagctggtaccctggaggggttaga 667
Query: 121 gttggagcagagccatattagacatccaccttgctgcacaggtataagaggctgtggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gttggagcagagccatattagacatccaccttgctgcacaggtataagaggctgtggttg 607
Query: 181 tattattgaatcagtatctggtgtccttgcctttgcccacatttaacaagagattctccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tattattgaatcagtatctggtgtccttgcctttgcccacatttaacaagagattctccc 547
Query: 241 agtgcacatgacacccttcaaagtcaccgccactaaaacatggattcccaatagtgaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 546 agtgcacatgacacccttcaaagtcaccgccactaaaacatggattcccaacagcgaagg 487
Query: 301 ttcagactgtgcaggtgct-tggtaggagagtcagcaccactttctacatgataactagg 359
||||||||| ||||||| | ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 486 ttcagactgggcaggtg-tgtggtaggagagtcagcatcactttctacaagataactagg 428
Query: 360 atcaggattcgagtcctcacaaattaaagaaccctggctaccaagcttacaaagcagccc 419
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 427 atcaggattccagtcctcacaaattaaagaaccctggctaccaagcttacagagcagccc 368
Query: 420 aagaagcaggagcactaaggtactttagttggtgggggagggtgcctgagtttataattt 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 367 aagaagcaggagcactaaggtactttagttggtgggggagggtgcctgattttgtaattt 308
Query: 480 ggcgatccaggtgatcagtcgtcagaagagcctgaagtgaactgattggcggcagaaatg 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggcgatccaggtgatcagtcatcagaagagcctgaagtgaactgattggcggcagaaatg 248
Query: 540 cgctcctctcatgggggaaatttcttaaatgtgtgtgtgtgtgtgtg 586
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 cgctcctctcatgggggaaatttcttaagtgtgtgtgtgtgtgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
