BAC Information

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BAC

Clone NameMSMg01-486I13
Chromosome2 (Build37)
Map Location 143,906,918 - 143,907,155
singlet/doubletsinglet
Overlap genenone
Upstream geneOtor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486I13.T7 (MSMg01no486_i13.b1)MSMg01-486I13.TJ (MSMg01no486_i13.g1)
ACCAG565715AG565716
length771733
length of high quality
(start - end)
238 (85 - 322)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no486_i13.b1 PHD_FILE: MSMg01no486_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:52 2005CHROMAT_FILE: MSMg01no486_i13.g1 PHD_FILE: MSMg01no486_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTGGCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTAAAACG
GCNGGATTCAGNAAAACTTGCANAAAAGGGGGGTTTCAGTTCTACGTTTC
TTCTTGTTGTTAAAATAAAAGTAATTGACCCTCTTAGAAGCAGACTCGGA
CACTAAATTTGACTATCTTGGGTGGAAGAGGAGAGGTATGAGGGTTATTT
TTAATTGTCAACTTGACAGAAGCAAGACTCACTGGGAAATGGGGTGTTGG
GAGTGCCTGTAGGGGATTTTCTTGATTGCGTTCATGGAGATGGAAGACCT
GCCCACTGGCTGGGATTCTAGACNATANATTTGGAGAAAGGGAGCGGATT
GCATACATTGCTCTCTCCTTGACGGGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTNCCCCCCCTTTTTTTTGTTGGGGGGCCTTG
TGCGCCTGCCTGTTCGTGTTTTTTTTTGCGCGTTTTTTGCGTTTTGCTTC
GTCCGGTCCTTCGTGTTTCCTCCCTTTGCGCGCTTTTTCCCCTCTTCTTT
TTCTCTCCTTTTTTGCCCTCCGGTCTTTCTCCCTTCTTTCGTGTTCGTGT
GGGCTGTCGTTTTTTTTTGCCTTTTTTCTGTGTGTCTCTTTTTTTCCGGT
TGTGGTGCCGCCCCCTTTTTTTTTTTTTTTTTTGTGGGTGGCGGTGTGGG
GTGTCCGTTGTGTTTGTTTTCTTGTTGCTCCCGCCTGCTGTGTTGTCCTC
CTCTCTCCTCTTCTATTTTGG
ATCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCCAAAAAAAATTCCCTGGAGAAGGAAACAGT
GCTTGATAACTGAAAACCTACACAGGACTAGTGAAGTCATGAATCTTGGA
GGAAAACCTACAACTGATACTTAACTACATTCTAAATATTTGTCCTTGTA
TATATAACCACAGAGAAAAATCATAACCAAACTGCAGAGGTTTGGAGGCC
AATCACAACTGTATCTGCAATACAGCTAAGGCTCAGGGGGATATTACAGA
AAGGGGGGGGCACAAGACTGTATTTTTTTTGCAAAATAGAGAGTATGCTG
TGGTATTATTGTGTCTTCTAGACCTATGAATTCTCACTAACATATCTGCC
TAAACATGATCTGAACAATGCTAACTGGGTGAGGGATTTTCAGGAGTTCT
TAACCCTACACAAAGAAGTTCAGACAACTAAGGAGTGCTGAGAGAATAGA
AGTCTCCCCTGGGGAGGGAAACACTGGTTATCCAATACCAAATAGTCAGC
CCCGTACACATACAAGTAACTTGGATAGACTCAGCAAGTTGTATCTAGGA
GTGTATGTGTAACAATAATGAAAAGAGTGGTTGGCAATTTGAAGAATAAG
ATGTATATAGGAGTGTTTGGAGGAAGGGCAGAGGGGTATAATTGTATCAT
ACATAACTTTAAAAGATGCGATAGTGAAAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_i13.b1 MSMg01no486_i13.b1 CHROMAT_FILE:
MSMg01no486_i13.b1 PHD_FILE: MSMg01no486_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:52 2005
         (238 letters)



>mm_chr2_143906718_143907355
          Length = 638

 Score =  398 bits (206), Expect = e-115
 Identities = 230/238 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagttctacgtttcttcttgttgttaaaataaaagtaattgaccctcttagaagcaga 60
           |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||
Sbjct: 201 ttcagttctacgtttcttcttgttgttaaaataaaagtaaatgagtctcttagaagcaga 260

                                                                       
Query: 61  ctcggacactaaatttgactatcttgggtggaagaggagaggtatgagggttatttttaa 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcggacactaaatttgactattttgggtggaagaggagaggtatgagggttatttttaa 320

                                                                       
Query: 121 ttgtcaacttgacagaagcaagactcactgggaaatggggtgttgggagtgcctgtaggg 180
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttgtcaacttgacagaagcgagactcactgggaaatgggctgttgggagtgcctgtaggg 380

                                                                     
Query: 181 gattttcttgattgcgttcatggagatggaagacctgcccactggctgggattctaga 238
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gattttcttgattgcattcatggagatggaagacctgcccactggctgggatcctaga 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)