CACCCTATACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAAAATAACTCTGTAGTCCATTTTTCCTGAGCAA
TATCTCAATGTTTCTACCATGGTTGCCCATATACAAACAAGATGCACCAT
GTCATCCTTCCATTGCTGTATATGAATGTCTTACAATGAACTTCAAGCCC
AATTCTTGCCCTGTCACTGTCTCTAGCAGTTGATAGAAATTAGAAAATAC
CAATCTTGCAATTTTACTGGTAAGAACACTAAAGTTCAAAGCAAAGAGTT
AGAAAGGTTCTACTACTGAAATTAATATGTCTGTGTTTCCCACTACAGCT
CTTTGCTGTGTTGAGACAGGGTCACACTATTTATTTCTGGGTCCCAGGGG
ACCTTGGACAGGGCTCTTGCCTAGCTCTAGTATCTTTATCCAGGAAGTGA
GGATCCTGGATACTCCTTTATCCTTAATGTTTCATGCTGATGCTTCCCTG
GAGGATCAGGGCTAGACCCAGAGCCAGTGGCTGTCTGACCCTTCTTGGTC
TGTTCATTGTCATTCTTTCCATTTTCACATCACCACCTCAGACTCTGTGA
CAAATCTTCTTTGTAATTTCCCTAGCAGGACTGCATAACAGTTCTAATCA
CCAGAGGACAGGCTGCTGAGCAGTCTGTCTGCGGTTGGGGTCGGGGTGGG
ACACACACCTTGTCTTCTATTTGCATAAGA

NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTTTTAGTGTACACAG
GAGGTAAAGGGGAAGCCTGATTTGAAATGCAGATTCCAATGCCTCGTGGC
AAAAGGGTTATGATCCCTGTGCCTGCATGCAGCACCTGAGAAGGAGTGTG
GGAAGCTGTCAAAGTTGAAGAAGCTTTATCAGAAGTTTTGGGCTNNTGTC
TAAGGAACTAGNTGGCNTGNTGGNTTCTAGTCAAGNCTTTGGGGTGGGGG
GCCCCCCCCAAAAANNCCCTTCTTTNTGTTGGGTGTNNNNNTTNTTTTTT
TTTTTTTGTTGTTTTGGGGGTGTGTTGNGGGTGTTTTTGTTTTTGGTGTG
TTGTTTTTTGTTTTTTTTTTTTTTTTGTGGGTTTTGTTTGTTGTTGGTTT
TCCTGTTTTTTGTTTTTTGTTGTTGTTNNTGGTGTTTTTTTGTTGTTTTG
TTTTTCCGCCCCCGCCCCCCCTTCTTTTTTTTCTCTCTGCGCCTCGCCCG
TGTTTTTTCCTCTTTCTTTTTCCTCCCCCTCTTCTTTTCTGCTTTTTCGT
GTTCCTCCTTTTTCTCCCTTTCTTTCTTTTTTTCTCTCCCCCTCCTCTCT
TCCCCTTTCGTGGTTTCTTTTCTGCGTCCCCTCTCCTCCTCTCCTCCTCC
TCCTCTTTTTCTCCTCTCG

Query= MSMg01no487_b02.b1 MSMg01no487_b02.b1 CHROMAT_FILE:
MSMg01no487_b02.b1 PHD_FILE: MSMg01no487_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:34 2005
         (674 letters)



>mm_chr2_106401661_106402737
          Length = 1077

 Score = 1263 bits (653), Expect = 0.0
 Identities = 667/673 (99%), Gaps = 3/673 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaataactctgtagtccatttttcctgagcaatatctcaatgtttctaccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattcaaaaataactctgtagtccatttttcctgagcaatatctcaatgtttctaccat 818

                                                                       
Query: 65  ggttgcccatatacaaacaagatgcaccatgtcatccttccattgctgtatatgaatgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggttgcccatatacaaacaagatgcaccatgtcatccttccattgctgtatatgaatgtc 758

                                                                       
Query: 125 ttacaatgaacttcaagcccaattcttgccctgtcactgtctctagcagttgatagaaat 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttgcaatgaacttcaagcccaattcttgccctgtcactgtctctagcagttgatagaaat 698

                                                                       
Query: 185 tagaaaataccaatcttgcaattttactggtaagaacactaaagttcaaagcaaagagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tagaaaataccaatcttgcaattttactggtaagaacactaaagttcaaagcaaagagtt 638

                                                                       
Query: 245 agaaaggttctactactgaaattaatatgtctgtgtttcccactacagctctttgctgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agaaaggttctactactgaaattaatatgtctgtgtttcccactacagctctttgctgtg 578

                                                                       
Query: 305 ttgagacagggtcacactatttatttctgggtcccaggggaccttggacagggctcttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttgagacagggtcacactatttatttctgggtcccaggggaccttggacagggctcttgc 518

                                                                       
Query: 365 ctagctctagtatctttatccaggaagtgaggatcctggatactcctttatccttaatgt 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 517 ctagctctagtatctttatccaggaagtgaggaacctggatactcctttatccttaatgt 458

                                                                       
Query: 425 ttcatgctgatgcttccctggaggatcagggctagacccagagccagtggctgtctgacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttcatgctgatgcttccctggaggatcagggctagacccagagccagtggctgtctgacc 398

                                                                       
Query: 485 cttcttggtctgttcattgtcattctttccattttcacatcaccacctcagactctgtga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cttcttggtctgttcattgtcattctttccattttcacatcaccacctcagactctgtga 338

                                                                       
Query: 545 caaatcttctttgtaatttccctagcaggactgcataacagttctaatcaccagaggaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caaatcttctttgtaatttccctagcaggactgcataacagttctaatcaccagaggaca 278

                                                                       
Query: 605 ggctgctgagcagtct---gtctgcggttggggtcggggtgggacacacaccttgtcttc 661
           ||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 277 ggctgctgagcagtctgaggtctgcggttggggtcggggtggggcacacaccttgtcttc 218

                        
Query: 662 tatttgcataaga 674
           |||||||||||||
Sbjct: 217 tatttgcataaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1077
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1067
Effective search space:   708488
Effective search space used:   708488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_b02.g1 MSMg01no487_b02.g1 CHROMAT_FILE:
MSMg01no487_b02.g1 PHD_FILE: MSMg01no487_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:34 2005
         (165 letters)



>mm_chr2_106248686_106249250
          Length = 565

 Score =  271 bits (140), Expect = 2e-77
 Identities = 158/164 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgttttagtgtacacaggaggtaaaggggaagcctgatttgaaatgcagattccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tcctgttttagtgtacacaggaggtaaaggggaagcctgatttgaaatgcagattcccat 260

                                                                       
Query: 61  gcctcgtggcaaaagggttatgatccctgtgcctgcatgcagcacctgagaaggagtgtg 120
           |||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||||||
Sbjct: 261 gcctcgtggcaaaagggttatgatccctgtgcccacatgcggcacctgggaaggagtgtg 320

                                                       
Query: 121 ggaagctgtcaaagttgaagaagctttatcagaagttttgggct 164
           ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagttgtcaaagttgaagaagctttatcagaagttttgggct 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)