Query= MSMg01no487_b08.b1 MSMg01no487_b08.b1 CHROMAT_FILE:
MSMg01no487_b08.b1 PHD_FILE: MSMg01no487_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:35 2005
(615 letters)
>mm_chr2_93818152_93819170
Length = 1019
Score = 998 bits (516), Expect = 0.0
Identities = 585/620 (94%), Gaps = 24/620 (3%)
Strand = Plus / Plus
Query: 1 ccaacattagtttccccagtttaatgacactgctagttcagtgggccacagagcttctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaacattagtttccccagtttaatgacactgctagttcagtgggccacagagcttctga 260
Query: 61 caaaatcttcatgttggctaaggatctataagatgcagacacttgccctgatgtgtgaga 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 caaaatcttcatgttggctaaggatctataagatgcaggcacttgccctgatgtgtgaga 320
Query: 121 aattgggggacacacagctggcctgctgctggctatggctc-agcc---gat-tgagtcc 175
||||||||||||||||||||||||||||||||||||||||| | || | | |||||||
Sbjct: 321 aattgggggacacacagctggcctgctgctggctatggctcca-cctcagttatgagtcc 379
Query: 176 acctcagttagcctctgtactggctagttttgtgtcaacttgacacagctggagttatca 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acctcagttagcctctgtactggctagttttgtgtcaacttgacacagctggagttatca 439
Query: 236 cagagaaaggagcttcagttgaggaagtgcctccatgagatccaactgtaaggcattttc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagagaaaggagcttcagttgaggaagtgcctccatgagatccaactgtaaggcattttc 499
Query: 296 tcaattagtgatcaagggggaaaggtcccttgtgggtgggaccatatctgggctggtaat 355
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 tcaattagtgatcaaaggggaaaggtcccttgtgggtgggaccatctctgggctggtaat 559
Query: 356 cttggttctataagagagcaggctgagcaagccaggggaagcaagccagtaaggaacatc 415
||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 560 cttggttctataagagagcaggctgagcaagccag--------------taa----catc 601
Query: 416 cctccatggcttctgcatcagctcctgcttcctgacctgcttgagttccagtcctgactt 475
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 602 cctccatggcctctgcatcagctcctgcttcctgacatgcttgagttccagtcctgactt 661
Query: 476 ccttggtgatgaacagcagtatggaagtgtaagccaaataaaccctttcctccccaactt 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 662 ccttggtgatgaacagcagtatggaagtgtaagctgaataaaccctttcctccccagctt 721
Query: 536 gcttcttggtcgtgatgtttgtgcaggaacagaaaccgtaagacagcctctgaaatttgt 595
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 722 gcttcttggtcgtgatgtttgtgcaggaatagaaaccgtaagacagcctctgaaatttgt 781
Query: 596 ctctgccagcacaagtgcag 615
||||||||||||| ||||||
Sbjct: 782 ctctgccagcacatgtgcag 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_b08.g1 MSMg01no487_b08.g1 CHROMAT_FILE:
MSMg01no487_b08.g1 PHD_FILE: MSMg01no487_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:35 2005
(583 letters)
>mm_chr2_93992508_93993486
Length = 979
Score = 1054 bits (545), Expect = 0.0
Identities = 573/583 (98%), Gaps = 4/583 (0%)
Strand = Plus / Minus
Query: 1 tgtgcttagtaaaatcttaccaggcagttctttgtgtctagctcccttcagtaaggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tgtgcttagtaaaatcttaccaggcagttctttgtgtctagctcccttcagtaaggaaaa 917
Query: 61 gctaggatagacttagacagattcagttgtgtgcagtttttcaagtacatttgaaaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gctaggatagacttagacagattcagttgtgtgcagtttttcaagtacatttgaaaaacc 857
Query: 121 ttgaggtcatctttgatccttctccaaatataatctgttaggaaattcctttgactcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ttgaggtcatctttgatccttctccaaatataatctgttaggaaattcctttgactcaaa 797
Query: 181 tttcaaggtatacagacgctctcatttctaagccttacaaatcagcttctgtgtgctttc 240
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 796 tttcaaggtatacagaggctctcatttctaagccttacaaatt--cttctgtgtgctttc 739
Query: 241 ccagtggctcctctccagacgggctgtggaaagcttgtgcccactgtcatcaccagtcca 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 738 ccagtggctcctctccagacgggccgtggaaagcttgtgcccactgtcatcaccagtcca 679
Query: 301 cttctgctgcttgttcctaggagatgggaagcattagcagggacggaccgtgggcatcta 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 cttctgctgcttgttcctaggagatgggaagcattagcagggacgggccgtgggcatcta 619
Query: 361 tctcctgagccttcagtgttactgactcagtacccagctgctggtgtagctcaaggttat 420
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 618 tctcctgagccttcagtgttactgactcagtacct-gctgctggtgtagctcaaggttat 560
Query: 421 ggtacaggcacattcaactcttcctgctacagtcctggacttcagggaattggtcctgtc 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 559 ggtacaggcacattcaactcttcctgctacagtcctggacttcaggga-ttggtcctgtc 501
Query: 481 agctgtcagtgcatggctcctcagcactagagcattagagctagtgattctcagtggtgt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 agctgtcagtgcatggctcctcagcacgagagcattagagctagtgattctcagtggtgt 441
Query: 541 ctggagcttgcagcaactgctgtgttggctcttcacagctctt 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctggagcttgcagcaactgctgtgttggctcttcacagctctt 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 979
Length adjustment: 10
Effective length of query: 573
Effective length of database: 969
Effective search space: 555237
Effective search space used: 555237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
