BAC Information

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BAC

Clone NameMSMg01-487E17
Chromosome2 (Build37)
Map Location 66,887,548 - 66,887,904
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
Downstream geneGm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487E17.T7 (MSMg01no487_e17.b1)MSMg01-487E17.TJ (MSMg01no487_e17.g1)
ACCAG566292AG566293
length764750
length of high quality
(start - end)
647 (47 - 693)585 (80 - 664)
definitionCHROMAT_FILE: MSMg01no487_e17.b1 PHD_FILE: MSMg01no487_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:52 2005CHROMAT_FILE: MSMg01no487_e17.g1 PHD_FILE: MSMg01no487_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGGGTCCTCCAGAGCTTCTCCAAAGGATGGGATGTCATTTTCC
TTAGGAAAACCTGTTATTTTGTTAAACTTCCCTCCATGATTGATGGCTTT
ATCTGTGAAGATAATGCTAAATAGTGATATCAACTGTACACAACTTTATT
CCAGAGTATGACACCAGCCTTTGCGAGTTTGAGATCAGCTTAGTCTTCAC
TGTGAGACCTTATCTTTAAAAAAAAAAAAAAGAAGTAAATCATACACAGA
TGTAACCATAGGGCATTTGACATGGGGCAACAAAAGTCAGAAGAAATTCC
TGTTAATAATTGGCACTATAAAATAGGATATATAGAATACTGAAACAGAA
TCTCTTTTCACACAAAACTCAGTTGGAAATAGATGGAAGATTAATGTAAA
TAACTATTCAAACAAGTAGAGGAAAACATAGTGGATATTCTGAAAAAAAA
AGTAGACAAAAGTAATGAACTTCAGAAGAGGAATCCAACAACTCTGGTAG
TTCTCTCCTCTAAATAACAAATGGGATTACATCAAATTAAAACTCCTCTT
CAGAGTAAATTAACAAATTAACAGACTGAAGAGAAAGCAGACAATGGGGG
AAATTTTTGTTGGCTTTTAACCAACAAATCACTAACTTTCAGGCATATAA
AGAATTCAAATGTATACAGCATAACAACCTATAATCTAATCAATAAATGG
CCAAATAAACAAAA
NNNCCAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGACTTTAATCTCTTT
CTTTATTTCTTTCTCAATGAAGTGATTAATAAGTTGAGTGTTTTTCAATT
TCCATGCTTTTGTGGGCTTTCTATCGTTTCTATTGTTATTTAAGTCCAGT
CTTAATCTGTGTTGGTATGATAGAATCCAAGGCATTATTTCAATATTCTT
GTATCATTTGAGGTTTAATTTTTGCCTGATAATATGGTCAATTTTGGAGC
ACATTCTGCAAGTTACTGAGTAGAAGGTATATTCTTTTGGTTTAGGGTTA
AGGGTTCTGTGGCTATCTGTTAAATCCTTTTTGTTCAAAACATTTGATAG
TTTCATTGTTTCTCTGTTTAGTTTCTGTTTCAATGACCTAAGCATTGGTG
AGAGTGGGGTGTTGAAGTCCCCATGTTTATTGCGTGGTGTTTAATGTATG
ATGTGAGGTTTAGTAAAGTTTCCTTTACAAATGTGGGTGACTTTGCATTT
GGAACACAGATATTCAGAATTGTGATGGTATGTGGATTTTTTTTCCTTTG
ATGACTATGAAGTGTTCTTCCTCATGTCTATTGGTAACTTTTGGTTGAAA
ATCTGTTTTATTAGATATTAGAATAGGCCCTCTTGGCTATATTTGCTTGG
AAAACTATTCCTAGCCCTTTACTCTGAAGTTGTGTCTATATTTGCTGCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_e17.b1 MSMg01no487_e17.b1 CHROMAT_FILE:
MSMg01no487_e17.b1 PHD_FILE: MSMg01no487_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:52 2005
         (647 letters)



>mm_chr2_66887548_66888594
          Length = 1047

 Score =  677 bits (350), Expect = 0.0
 Identities = 356/358 (99%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgggtcctccagagcttctccaaaggatgggatgtcattttccttaggaaaac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaattcatgggtcctcaagagcttctccaaaggatgggatgtcattttccttaggaaaac 298

                                                                       
Query: 65  ctgttattttgttaaacttccctccatgattgatggctttatctgtgaagataatgctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctgttattttgttaaacttccctccatgattgatggctttatctgtgaagataatgctaa 238

                                                                       
Query: 125 atagtgatatcaactgtacacaactttattccagagtatgacaccagcctttgcgagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atagtgatatcaactgtacacaactttattccagagtatgacaccagcctttgcgagttt 178

                                                                       
Query: 185 gagatcagcttagtcttcactgtgagaccttatctttaaaaaaaaaaaaaagaagtaaat 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 177 gagatcagcttagtcttcactgtgagaccttatcttt-aaaaaaaaaaaaagaagtaaat 119

                                                                       
Query: 245 catacacagatgtaaccatagggcatttgacatggggcaacaaaagtcagaagaaattcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 catacacagatgtaaccatagggcatttgacatggggcaacaaaagtcagaagaaattcc 59

                                                                     
Query: 305 tgttaataattggcactataaaataggatatatagaatactgaaacagaatctctttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tgttaataattggcactataaaataggatatatagaatactgaaacagaatctctttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)