Query= MSMg01no487_h05.b1 MSMg01no487_h05.b1 CHROMAT_FILE:
MSMg01no487_h05.b1 PHD_FILE: MSMg01no487_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:04 2005
(638 letters)
>mm_chr2_122140683_122141721
Length = 1039
Score = 1166 bits (603), Expect = 0.0
Identities = 627/635 (98%), Gaps = 1/635 (0%)
Strand = Plus / Plus
Query: 5 gaattcaacctcttcctcctgttagcctctgatcatgctgtggagtgaacagttcaggca 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacctcagcctcctgttagcctctgatcatgctgtggagtgaacagttcaggca 264
Query: 65 cgttccccaccgtggctaggagaggatgaaatggttggatcagataaatggtttacctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgttccccaccgtggctaggagaggatgaaatggttggatcagataaatggtttacctca 324
Query: 125 gatcccacagaggacgaagagcagacctgagacctcagctgggttcctcagctacttctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcccacagaggacgaagagcagacctgagacctcagctgggttcctcagctacttctt 384
Query: 185 cccaagctggactcctgcaatggagcagcctctgtggggagctgggccgaagcaagg-tg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 cccaagctggactcctgcaatggagcagcctctgtggggagctgggccgaagcaagggtg 444
Query: 244 tccaggttctcagaaactaaagttcacaagggcaaggttggctttgttctcttcttcact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccaggttctcagaaactaaagttcacaagggcaaggttggctttgttctcttcttcact 504
Query: 304 ggctccagagccgaggccaggtccgtacacagcgcgtgttggtcagtcagctattgaatg 363
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 505 ggctccagagccgaggccaggtctgtacacagcgcgtgttggtcagtcatctattgaatg 564
Query: 364 aactagaggccttccgagagagtgagcctcttgctttttgctctccaagcccatctccct 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 aactagaggccttccgagagagtgagtctcttgctttttgctctccaagcccatctccct 624
Query: 424 agccttgattcttagaggccctgccttatcatgattctctcgaatatttggggctcatcc 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtcttgattcttagaggccctgccttatcatgattctctcgaatatttggggctcatcc 684
Query: 484 ttctatcctctgttgttctaggtttctgttttgaagtatttcaatatttaatcccacgtt 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctatcctctgttgttctaggtctctgttttgaagtatttcaatatttaatcccacgtt 744
Query: 544 accatttccatcatggggttccacttagctctggcctggattctcctggttgggacactg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 accatttccatcatggggttccacttagctctggcctggattctcctggttgggacactg 804
Query: 604 gcttctttgggtgagtattagagttgcagaggaac 638
|||||||||||||||||||||||||||||||||||
Sbjct: 805 gcttctttgggtgagtattagagttgcagaggaac 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_h05.g1 MSMg01no487_h05.g1 CHROMAT_FILE:
MSMg01no487_h05.g1 PHD_FILE: MSMg01no487_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:04 2005
(601 letters)
>mm_chr2_122312895_122313895
Length = 1001
Score = 905 bits (468), Expect = 0.0
Identities = 562/604 (93%), Gaps = 23/604 (3%)
Strand = Plus / Minus
Query: 1 ccttgagaatcatcagtcctgctgtgt--gatggtggaggtctcagatcagcacactagt 58
||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 691 ccttgaggatcattagtcctgctgtgtgggatggtggaggtctcagatcagcacactagt 632
Query: 59 gtgccaagtggcaatcatccttggcaggtaagcaaaaaatatcaataacattcatgtcta 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtgccaagtggtaatcatccttggcaggtaagcaaaaaatatcaataacattcatgtcta 572
Query: 119 aattgtgcttaaagaggaaaaagaaactttgatggggg--gaggggtgaaagagcatctt 176
|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 571 aattatgcttaaagaggaaaaagtaactttgatggggggtgaggggtgaaagagcat--- 515
Query: 177 actatacttcccaggctattcttacactcattaagaccagaactcatcttcctgtatcag 236
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ----------ccaggctattcttacactcattaagaccagaactcatcttcctgtatcag 465
Query: 237 ccttcaaggtacagagttgacaggtgtgtaacactagaccaggatgaaattctactcatg 296
||||||||||||||||||||||| ||||||| ||||||| || ||||||||| |||||||
Sbjct: 464 ccttcaaggtacagagttgacagttgtgtaatactagactagcatgaaattccactcatg 405
Query: 297 tacttaacagcaagaatttaatcccagccctcaggagtttgaggcaagagcataccagta 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 404 tacttaacagcaagaatttaatcccagccctcaggagtttgaggcaagagcatatcagta 345
Query: 357 aatccaacggggcaccctagcttataaatgagtaccaagccagctataactaag--tagt 414
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 344 aatccaacggggcaccctagcttataaatgagtaccaagccagctataact--gcttagt 287
Query: 415 aacattgtatcaaaaagcaaagagaagaaaaaaaaaagaaga-aaaagaaaagatccaaa 473
|||||| |||||||||||||||||||| ||| |||||||||| || || |||||||||||
Sbjct: 286 aacattttatcaaaaagcaaagagaag-aaagaaaaagaagagaacagcaaagatccaaa 228
Query: 474 cccaaacaagaaaaacaaaacaaaacaaacgaaccaggacactcctgggccgagttcagc 533
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 227 cccaaacaagaaaaacaaaacaaaacaaacgaaccaggacattcctgggccaagttcagc 168
Query: 534 tatggctctaagcagactgaccatagaatttacattagtgactgttaaactgctaacaaa 593
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 167 tatggctctaagcagactgaccatagaatttacattattaactgttaaactgctaacaaa 108
Query: 594 agga 597
||||
Sbjct: 107 agga 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
