BAC Information

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BAC

Clone NameMSMg01-487H07
Chromosome2 (Build37)
Map Location 3,695,254 - 3,695,899
singlet/doubletsinglet
Overlap gene3110001A13Rik
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495
Downstream geneLOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487H07.T7 (MSMg01no487_h07.b1)MSMg01-487H07.TJ (MSMg01no487_h07.g1)
ACCAG566415AG566416
length765758
length of high quality
(start - end)
601 (77 - 677)646 (78 - 723)
definitionCHROMAT_FILE: MSMg01no487_h07.b1 PHD_FILE: MSMg01no487_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:04 2005CHROMAT_FILE: MSMg01no487_h07.g1 PHD_FILE: MSMg01no487_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTCTTATAATTTGCGGCGCTAAAAGACTCACATAGTCGATAAATG
CGCGGAATTCATGAAATTCTCACAAAATGGATGGATCTGGAGGATATCAT
CCTGAGTGAGGTAACCCAATTACAAAAGAACACACATGATATGGACTCAC
TGATAAGTGGATATTATCCCAGAAGCTCAGAATACCCAAGATATAATTTG
CAAAACACATGAAACTCAAGTAGAAGGAAGACCAAAGTGTGGATACTTCG
TTCCTTCTTGGAAGGGAGAACAAAATACCCATGGAAGGAGTTACAGAGAC
AAAGTTCAGAGCAGAGACTGAAGGAATGTTCATCCAGAGACTGCCCCACC
TGGGGATCCATCCTATAAACAACCACCAAACCCAGACACTATTGCAGATA
CCAACAAGAGCTTGCTGACGGGAGCCTGATATAGCTGTCTCCTGAGAGGC
TCTGCCAGTGCCTGACTAATACAGAAGTGGATGCTCACAGTCATCCATTA
GATGGAGCATGGAGTCCCCAATTAAGGAGCTAGAGAAAGGACCCAAGAAG
CTGAAGGGGTTTGCAGCCCCCTTGGAGAAACAACAATATGAACTAACCAG
TAACCCCAGAGCTCCCTGGGACTAAACCACCAATCAAAGAAAACACAAGG
AGAGGCTCATGGCTCCATCTGCATATGTAGCTGAAGATGGCCTAGTTGGT
CATCAATGGGAGGGGAGGCCCTTGGTCCTGTGAAGGCTCTATGGCCCACG
ATAGGGGAATGCCTG
TTGTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTGCCTGGCATCCAGCATCC
CTGCCTCTCAGAGCAGACCCCTTTTTCAAGCCCTACCTGCTCCAGCTTCT
GCTGTCGCTTTAATAGTTCTATTTCCAGGTCGGATTTCTTCTTCTGAGCT
TCTTCCTCCTTCTGCTTTATCACTTGGTCTCGTCTTCTCTTCTCCATCAC
CTTCTGCAGTTCTGGTTTATTCTGAGGGGCAAGACCTCTGGGCAAAGAAA
GGATTGAAAAACTGTCATCTCTTTTGAAGTACCTCTCAGGAAAAGAAATA
TAACTGAAGGTATGAGCTGCAGAAGAGATGGAAACGAAATTAGCCAGAGG
AGAGTATCTACTGCTAAGCCAAATGGTTCTTCAATAGCACTCAGACACTT
ACTGCCTGGAAGAGAAGCCAAAGGCATCTTCCAAAGAGTTGAGAGAGTCC
ATGAATCCAATAAAAGCACATTAAGGCCAGGGCTGTAGGGAAGGCAGGCA
GCAGTGTGCTTACACAGTGGGTGGGGCAGATCCTCAAAAGAGAGATAAAG
ATGCCTAGGACAGGAGGCAAATCCACCTGAAGTCACACTGCAGCCGCTAA
TCTCACATTCTGAAGACAGTTTAGTGGCACAGCAGTTGAGAAAAATGGCT
GAGGAAGTCTCTCTCCTCTCATCTTTCAGACCTGAAGGAGGCTCTCAAAC
CTTTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_h07.g1 MSMg01no487_h07.g1 CHROMAT_FILE:
MSMg01no487_h07.g1 PHD_FILE: MSMg01no487_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:04 2005
         (646 letters)



>mm_chr2_3695054_3696099
          Length = 1046

 Score = 1195 bits (618), Expect = 0.0
 Identities = 639/646 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttgcctggcatccagcatccctgcctctcagagcagacccctttttcaagccctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tgcttgcctggcatccagcatccctgcctctcagagcagacccctttttcaagccctacc 787

                                                                       
Query: 61  tgctccagcttctgctgtcgctttaatagttctatttccaggtcggatttcttcttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgctccagcttctgctgtcgctttaatagttctatttccaggtcggatttcttcttctga 727

                                                                       
Query: 121 gcttcttcctccttctgctttatcacttggtctcgtcttctcttctccatcaccttctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gcttcttcctccttctgctttatcacttggtctcgtcttctcttctccatcaccttctgc 667

                                                                       
Query: 181 agttctggtttattctgaggggcaagacctctgggcaaagaaaggattgaaaaactgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agttctggtttattctgaggggcaagacctctgggcaaagaaaggattgaaaaactgtca 607

                                                                       
Query: 241 tctcttttgaagtacctctcaggaaaagaaatataactgaaggtatgagctgcagaagag 300
           ||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctcactggaagtatctctcaggaaaagaaatataactgaaggtatgagctgcagaagag 547

                                                                       
Query: 301 atggaaacgaaattagccagaggagagtatctactgctaagccaaatggttcttcaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atggaaacgaaattagccagaggagagtatctactgctaagccaaatggttcttcaatag 487

                                                                       
Query: 361 cactcagacacttactgcctggaagagaagccaaaggcatcttccaaagagttgagagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cactcagacacttactgcctggaagagaagccaaaggcatcttccaaagagttgagagag 427

                                                                       
Query: 421 tccatgaatccaataaaagcacattaaggccagggctgtagggaaggcaggcagcagtgt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 tccatgaatccaataaaagcacattaaggccagggctgtagggaaggcaggcagcagtat 367

                                                                       
Query: 481 gcttacacagtgggtggggcagatcctcaaaagagagataaagatgcctaggacaggagg 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 gcttacacagtgggtggggcagatcctcaaaagagagatgaagatgcctaggacaggagg 307

                                                                       
Query: 541 caaatccacctgaagtcacactgcagccgctaatctcacattctgaagacagtttagtgg 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 306 caaatccacctgaagtcacactgcagccgctaatctcacgttctgaagacagtttagtgg 247

                                                         
Query: 601 cacagcagttgagaaaaatggctgaggaagtctctctcctctcatc 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cacagcagttgagaaaaatggctgaggaagtctctctcctctcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)