BAC Information

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BAC

Clone NameMSMg01-487N05
Chromosome2 (Build37)
Map Location 154,962,814 - 154,963,441
singlet/doubletsinglet
Overlap geneItch
Upstream gene1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877
Downstream geneLOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487N05.T7 (MSMg01no487_n05.b1)MSMg01-487N05.TJ (MSMg01no487_n05.g1)
ACCAG566695AG566696
length764782
length of high quality
(start - end)
628 (74 - 701)---
definitionCHROMAT_FILE: MSMg01no487_n05.b1 PHD_FILE: MSMg01no487_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:33 2005CHROMAT_FILE: MSMg01no487_n05.g1 PHD_FILE: MSMg01no487_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCACAGAGATTCTTCTGCCTGGCTTACATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTTAGTTCC
AGGCCAGCCAGATACACACAATGAGATCTTGTTTCTAAAGGAGAAGAAGG
AAGGAGAAGGAGAAGAGAAAAAGTAGAATTTTACCTAAACCTAGGTAAGA
GTCAGAGCTAGACTAGAACCGAACGTTACAATTCTGTATTCTTCAGATTC
CACAGTGAGTGGATGCTGCTACAAGCATCCGTGTCAGATGAGAAAAAACA
AAGACTGCTTCTAGCCTATGGCTGTTTATTGTTTAGATAAGAGTTTAATG
AAGCATTTAGCCTAGGTGTAAGCTTACCTTATCCCTTTTGACTCAGGAAA
TTGAGTTGGTACTAATAGGAAGCTGCCGTCTGTCAGGTCTCTTTTCTTTC
TTGTGCTTTACCTCTCATAGTTTGGGGGTTGGATCCATTGTAAGAACTAA
GGCAAAAGTATTTAAGTTTGTTTTTTCTTGTTATATTTATAGTGCCTAGC
CAAATTATGGGTTCATAATAAGCATTCAGTAAAGACATGCTAATTTTTAT
ACTGTAAATGATACTGGTTTGGGGTCAATATAAATCAGTAAGGGACTCAG
AGAATAGAATTGTACCCTTCCATGCTTGAGCAGTTTGCCCTCGTCTGCAA
ATATTATTAGGGTG
NCCCCCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCCCTGCGGAATTCCNCGCCATATGAGACCCCA
CTCAAAAAAAAAAAAAGTATTTCTCCCCCCATTTTTTTCGCCCGTCGTTT
TTCTTTTTTGGGTTTTTTTCCCTCGCTCTCCGGCCGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCTCTTTCCCCCCTCCCT
TCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCTTCCCCTCCCTTTCCCC
CCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTNCCCCCCCCCCCCC
CCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCTCTCTCCCCCCTCCCCCC
CCTCCCCCTCCCCTNTGCTCCCCCCCCCCGCGTNCCCCCTCCCCCCCCCC
CCCCTCCCCCCCCCTTCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTTCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCTCTCCCTCCCCCC
CCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCCGGCTCCCCCGC
TCCCCCCCCCCGCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCG
GGCTCCCCCCCCCTCCCCCACCCCCCCCCCCTTCCCCCCCCCTCCCGCTC
CCCCCCCCTTCCCCCCCCCCCCCCCCCTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_n05.b1 MSMg01no487_n05.b1 CHROMAT_FILE:
MSMg01no487_n05.b1 PHD_FILE: MSMg01no487_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:33 2005
         (628 letters)



>mm_chr2_154962614_154963641
          Length = 1028

 Score = 1199 bits (620), Expect = 0.0
 Identities = 626/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcctggcttacatagatagatagatagatagatagatagatagatagatagatagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcctggcttacatagatagatagatagatagatagatagatagatagatagatagata 260

                                                                       
Query: 61  gatagatagttagttccaggccagccagatacacacaatgagatcttgtttctaaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagatagttagttccaggccagccagatacacacaatgagatcttgtttctaaaggag 320

                                                                       
Query: 121 aagaaggaaggagaaggagaagagaaaaagtagaattttacctaaacctaggtaagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaggaaggagaaggagaagagaaaaagtagaattttacctaaacctaggtaagagtc 380

                                                                       
Query: 181 agagctagactagaaccgaacgttacaattctgtattcttcagattccacagtgagtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagctagactagaaccgaacgttacaattctgtattcttcagattccacagtgagtgga 440

                                                                       
Query: 241 tgctgctacaagcatccgtgtcagatgagaaaaaacaaagactgcttctagcctatggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgctacaagcatccgtgtcagatgagaaaaaacaaagactgcttctagcctatggct 500

                                                                       
Query: 301 gtttattgtttagataagagtttaatgaagcatttagcctaggtgtaagcttaccttatc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 501 gtttattgtttagataagagtttaatgaagcatttagcctaggtgtaagcttagtttatc 560

                                                                       
Query: 361 ccttttgactcaggaaattgagttggtactaataggaagctgccgtctgtcaggtctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttttgactcaggaaattgagttggtactaataggaagctgccgtctgtcaggtctctt 620

                                                                       
Query: 421 ttctttcttgtgctttacctctcatagtttgggggttggatccattgtaagaactaaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttcttgtgctttacctctcatagtttgggggttggatccattgtaagaactaaggc 680

                                                                       
Query: 481 aaaagtatttaagtttgttttttcttgttatatttatagtgcctagccaaattatgggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagtatttaagtttgttttttcttgttatatttatagtgcctagccaaattatgggtt 740

                                                                       
Query: 541 cataataagcattcagtaaagacatgctaatttttatactgtaaatgatactggtttggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cataataagcattcagtaaagacatgctaatttttatactgtaaatgatactggtttggg 800

                                       
Query: 601 gtcaatataaatcagtaagggactcaga 628
           ||||||||||||||||||||||||||||
Sbjct: 801 gtcaatataaatcagtaagggactcaga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)