Query= MSMg01no488_a20.b1 MSMg01no488_a20.b1 CHROMAT_FILE:
MSMg01no488_a20.b1 PHD_FILE: MSMg01no488_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:51 2005
(643 letters)
>mm_chr2_97813188_97814230
Length = 1043
Score = 969 bits (501), Expect = 0.0
Identities = 605/647 (93%), Gaps = 18/647 (2%)
Strand = Plus / Plus
Query: 1 gctacacagagaaa-cctagtctcgaaaaactaaaacaaaaaataaaaa--aataaaaaa 57
|||||||||||||| ||| ||||||||||||||||| |||||| ||||| |||||||||
Sbjct: 199 gctacacagagaaaccct-gtctcgaaaaactaaaaaaaaaaaaaaaaaagaataaaaaa 257
Query: 58 atcttattataacttactatattttagtttcaaaattcgatgtgtttatgtcaaaaatat 117
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 258 atcttattataacttactatattttagtttcaaaatttgatgtgtttatgtcaaaaatat 317
Query: 118 ctgcttttgagttttcaaatagaattagtaaaagaatattttaacaatatttggaccact 177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 ctgcttttgagttttcaaatagaattagtaaaataatattttaacaatatttggaccact 377
Query: 178 tctctacacaaaatatggtatcagttgcattgtggggtgtttacaaagtacagtatgcgt 237
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378 tctctacacaaaatatattatcagttgcattgtggggtgtttacaaagtacagtatgtgt 437
Query: 238 actacattatatatatatatatatatatatatatatatatatatatatatatatatatat 297
|||||||||||||||||||| |||||||||||||||||||||| | | | | ||||||
Sbjct: 438 actacattatatatatatatgtatatatatatatatatatatacacacacacatatat-- 495
Query: 298 atatatacatatagtcattatacagaaaaatttatatttatacataaacacacaagtatt 357
||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 496 --------atatagtcattatacagaaaaatttatatgtatacatga--acacaagtatt 545
Query: 358 tgcatgcataccttcatgtaatttcttcaaattatgtggcatctttcatggaatgtaagt 417
| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 546 tacatgcataccttcatgtactttcttcaaattatgtggcatatttcatggaatgtaagt 605
Query: 418 ctccacatgttttccttttggtggtagatataataagatctttttaaaagcaaaatagat 477
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct: 606 ctccacatgttttccttttggtggtagatgtaataagatctgtttaaaagcaaaatagct 665
Query: 478 aaaatataagtaatagttcactaagtcttgtattatttgggaatatttatctggatgaaa 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaaatataagtaatagttcactaggtcttgtattatttgggaatatttatctggatgaaa 725
Query: 538 ttagataatctaattcctaacacctggtacaatggcttgaaca-aagaatattgtttaat 596
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 726 ttagataatctaattcctaacacctggtacaatggcttgaacacaa-aatattgtttaat 784
Query: 597 aagtgccttgaaaattaaataagttcgcatatatgacagctaaccac 643
|||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 785 aagtgccttgtaaattaaataagttcacatatatgacagctaaccac 831
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 283 tatatatatatatatatatatacatata 310
||||||||||||||||||||||||||||
Sbjct: 480 tatatatatatatatatatatacatata 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_a20.g1 MSMg01no488_a20.g1 CHROMAT_FILE:
MSMg01no488_a20.g1 PHD_FILE: MSMg01no488_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:51 2005
(679 letters)
>mm_chr2_98003749_98004828
Length = 1080
Score = 1040 bits (538), Expect = 0.0
Identities = 568/578 (98%), Gaps = 3/578 (0%)
Strand = Plus / Minus
Query: 104 ggattggtaacaaacatttcccaatctgtcggttgccattttgtcctattgacactgttc 163
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 1080 ggattggtaacaaacatttcccaatctgttggttgccattttgtcctattgacagtgttc 1021
Query: 164 tttgatttatagaagtgtttcaaatttctgaggtctcatttgttgattgttgaacctaga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tttgatttatagaagtgtttcaaatttctgaggtctcatttgttgattgttgaacctaga 961
Query: 224 acctaagcctttggtgttctgtgcaggaaattttcccctgtgtacatgtgcttgaggctc 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 acctaagcctttggtgttctgtgcaggaaattttcccctgtgtacatgtgcttgaggctt 901
Query: 284 tcccccaatttccttatatgttttatttcccaactgtgaataagtttgggatatcctgtt 343
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 900 tcccccaatttccttatatgttttatttcccaactatgaataagtttgggatatcctgtt 841
Query: 344 ttgtttcctgagaatgggataacaaatattcattccaaagtatagatttactaaataaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttgtttcctgagaatgggataacaaatattcattccaaagtatagatttactaaataaga 781
Query: 404 acatcttaaatataaaaaa-aaaccctgatagtatgttcttggtagaaacagtggtgtag 462
|||||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 780 acatcttaaa-aaaaaaaacaaaccctgatagtatgttcttggtagaaacaggggtgtag 722
Query: 463 ttttcaactctgatctgatatcagatctgacctc-tttttttataaacaataagactttt 521
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 721 ttttcaactctgatctgatatcagatctgacctcttttttttataaacaataagactttt 662
Query: 522 ttattgtttttgtcagtttttctttgttttcagtaagttaatatgtagcgtgacatggca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttattgtttttgtcagtttttctttgttttcagtaagttaatatgtagcgtgacatggca 602
Query: 582 aaagaattcatattttaaaatgaataatgttttgttcaacttgttttctctaactaatta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaagaattcatattttaaaatgaataatgttttgttcaacttgttttctctaactaatta 542
Query: 642 ttcatattaagggatctttcttttctttccttctggga 679
||||||||||||||||||||||||| ||||||||||||
Sbjct: 541 ttcatattaagggatctttcttttcattccttctggga 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
