BAC Information

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BAC

Clone NameMSMg01-488C19
Chromosome2 (Build37)
Map Location 20,610,561 - 20,611,222
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488C19.T7 (MSMg01no488_c19.b1)MSMg01-488C19.TJ (MSMg01no488_c19.g1)
ACCAG566961AG566962
length671746
length of high quality
(start - end)
569 (44 - 612)667 (77 - 743)
definitionCHROMAT_FILE: MSMg01no488_c19.b1 PHD_FILE: MSMg01no488_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:00 2005CHROMAT_FILE: MSMg01no488_c19.g1 PHD_FILE: MSMg01no488_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATTCAAAGAGGATGCGCGGAATTCCTTATTTTCAAAAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGAATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGA
ATTTTATTGAGGATTTTTGCATCGATATTCATAAGATATATTGTTCTGAA
GTTCTCTATCTTTGTTGGATCTTACTGTGCTTTAGGTATCAGAGTAATAG
TGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGA
AATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACCAAACCCATCTGGTCCTGAGCTTTTTTTGGCTGGGAGACTAT
TAATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATGGGCA
ACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTC
CATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGG
ATCTGATGGTGTTTTGGATTT
CCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATATCTAGGGCGACACAGTA
AGATTCTACCTTTAGGGGAAAAAATGTAAGAAAATCCTTATATTTATTTG
AACACCATTGACATCCATACACTTGAACAAATGTTAGTATGATAAAAGAA
TAGATCACTAAAACCAGCCAACATCACTTCCTGGAAGTATGATTTCCTAG
GCATTGTTTCTGGTGTGGAAACCTGCTGCCATCTCTCTTCCTTTATAATT
CTTCCAGAACACTGGCTCATCCTCTTCTCATTGATAAGGAGCAGAGGCTA
AAGGGGGTGAATTATGTACAGGTCAGAGACAAACATGGTGAACTACAATA
ACTGTTGCAAGAATAGAGTGGTGTCATTATTGAGCCTCACAGAGCCATGG
TAGGTGGGATTAAACTGCACCCAGAGCCTGAATAGCTTGCCTTCACTCCA
CTCACTTTGCTAGGACTACTTAGTAATCTTCCAGCTCATGACCTTGCTTC
TTCTCTTGGTAGCAGCAATCTTCAGAAAGAGGCCAAGGTGCTTATGCAAA
CTCCCAGGTCACTTCACACCAATCTTCTGATCAAAACATGACAGGAACCA
TCATCAAAGCACCACCGGGAAGTCAGAGAACAAGCCCACACTCTAGACGG
CTTTGTCACCTGACAGCACTGCTTCACCCTGCAGCCGCTGAAGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_c19.g1 MSMg01no488_c19.g1 CHROMAT_FILE:
MSMg01no488_c19.g1 PHD_FILE: MSMg01no488_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:01 2005
         (667 letters)



>mm_chr2_20610361_20611429
          Length = 1069

 Score = 1112 bits (575), Expect = 0.0
 Identities = 640/663 (96%), Gaps = 4/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatatctagggcgacacagtaagattctacctttaggggaaaaaatgtaagaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| 
Sbjct: 201 cagaatatctagggcgacacagtaagattctacctttagga-aaaaaatgtaagaaaatt 259

                                                                       
Query: 61  cttatatttatttgaacaccattgacatccatacacttgaacaaatgttagtatgataaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttaaatttatttgaacaccattgacatccatacacttgaacaaatgttagtatgataaa 319

                                                                       
Query: 121 agaatag---atcactaaaaccagccaacatcacttcctggaagtatgatttcctaggca 177
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaataggagatcactaaaaccagccaacatcacttcctggaagtatgatttcctaggca 379

                                                                       
Query: 178 ttgtttctggtgtggaaacctgctgccatctctcttcctttataattcttccagaacact 237
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtttctggtgtggaaacctgctgtcatctctcttcctttataattcttccagaacact 439

                                                                       
Query: 238 ggctcatcctcttctcattgataaggagcagaggctaaagggggtgaattatgtacaggt 297
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 ggcttatcctcttctcattgataaggagcagaggctaaagggagtgaattatgtacaggt 499

                                                                       
Query: 298 cagagacaaacatggtgaactacaataactgttgcaagaatagagtggtgtcattattga 357
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagagacaaacatggtaaactacaataactgttgcaagaatagagtggtgtcattattga 559

                                                                       
Query: 358 gcctcacagagccatggtaggtgggattaaactgcacccagagcctgaatagcttgcctt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcctcacagagccatggtaggtgggattaaactgcacccagagcctgaatagcttgcctt 619

                                                                       
Query: 418 cactccactcactttgctaggactacttagtaatcttccagctcatgaccttgcttcttc 477
           | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 620 ctctccactcactttgctaagactacttagttatcttccagctcatgaccttgtttcttc 679

                                                                       
Query: 478 tcttggtagcagcaatcttcagaaagaggccaaggtgcttatgcaaactcccaggtcact 537
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 680 tcttggtagcagcaatcttcagaaagaggccacggtgcttatgcaaacgcccaggtcact 739

                                                                       
Query: 538 tcacaccaatcttctgatcaaaacatgacaggaaccatcatcaaagcaccaccgggaagt 597
            ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 740 ccacaccaatcttctgttcaagacatgacaggaaccatcatcaaagcaccacagggaagt 799

                                                                       
Query: 598 cagagaacaagcccacactctagacggctttgtcacctgacagcactgcttcaccctgca 657
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 800 cagagcacaagcccacactctagacagctttgtcacctgacagcactgcttcaccctgca 859

              
Query: 658 gcc 660
           |||
Sbjct: 860 gcc 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space:   695763
Effective search space used:   695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)