BAC Information

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BAC

Clone NameMSMg01-488F23
Chromosome2 (Build37)
Map Location 129,020,343 - 129,020,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461
Downstream geneLOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488F23.T7 (MSMg01no488_f23.b1)MSMg01-488F23.TJ (MSMg01no488_f23.g1)
ACCAG567111AG567112
length678731
length of high quality
(start - end)
606 (40 - 645)238 (74 - 311)
definitionCHROMAT_FILE: MSMg01no488_f23.b1 PHD_FILE: MSMg01no488_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:16 2005CHROMAT_FILE: MSMg01no488_f23.g1 PHD_FILE: MSMg01no488_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCACTATCAAGAGAGGATNNGNGGAATTCTCATCTCAGGACTACTGAAT
GGCTGAGAAGCACCTGAAAAAATTTTCAGCAACCTTAATCATCAGAGAAA
TGCAAATCAAAACAACCCTGAGATTTCATCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAAGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAGCACTCT
GGAAATCAGTCTGGTGGCTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAG
TAAGAAGGACACATGCTCCACTATGTTTATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TAAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACA
ATTTGCTAAATGCATGAAACTCAAGAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTAGCCTTGGAAGGTCTTGGTGCACA
CAGCCTAGCTTTGTGTACTGTTGTGCCAGACAGGCTGTTTTGCTCTGCCC
TCTGGAGGTCAAAGTAGGTGGGGTGGGGGTGGGGGTCCCAGACTCATGGC
TTTGTGACAGTGACTGACTTATAAAGATACTGTGGGCAGGGTGTTGAAGT
TTGGCTTAGCAATAGAGTGCTTGCCTAGCTATGGAAGTCCTGGGTTCTAT
CCCAGGTACTGCTTTTATGTAAATGTGGTTAAGAGCTCATACTGTTCTTA
GAGGACCTGAGTTTGATTCCTAGCACCTATATCGGGCAGCTCACAACTGC
CTGTGACTTCACCTCTAAGAGTATTCGGTGCCTCTAGACACCACAGGCAT
TCAAGAGCACATATCCACCCACATATACATATTTAAAGATAAAAAGAAAT
ATTAAAAAAAAAACAGACACTCACACTCCATGTATCTCATTGTTGCCACT
ACCCCTCTGGCAGCAGCCGATTTGCTTGGTCACTCTTCTGCAGCAAGAAG
TTTAAAACAACTTGTTCTTGGTGGCTGGAGAAAGGAAAGCAGTGTGGGTT
CTCTGCTCTCACCCAGTTGTTGAATAAAGAAAAACAGTGTTTGGATATTC
TAGTACCCTTAGGGGACGCTTATTCCGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_f23.g1 MSMg01no488_f23.g1 CHROMAT_FILE:
MSMg01no488_f23.g1 PHD_FILE: MSMg01no488_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:16 2005
         (238 letters)



>mm_chr2_129020143_129020780
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagccttggaaggtcttggtgcacacagcctagctttgtgtactgttgtgccagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgtagccttggaaggtcttggtgcacacagcctagctttgtgtactgctgtgccagacag 260

                                                                       
Query: 61  gctgttttgctctgccctctggaggtcaaagtaggtggggtgggggtgggggtcccagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgttttgctctgccctctggaggtcaaagtaggtggggtgggggtgggggtcccagac 320

                                                                       
Query: 121 tcatggctttgtgacagtgactgacttataaagatactgtgggcagggtgttgaagtttg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatggctttgtgacagtgactaacttataaagatactgtgggcagggtgttgaagtttg 380

                                                                     
Query: 181 gcttagcaatagagtgcttgcctagctatggaagtcctgggttctatcccaggtactg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttagcaatagagtgcttgcctagctatggaagtcctgggttctatcccaggtactg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)