Query= MSMg01no488_h11.b1 MSMg01no488_h11.b1 CHROMAT_FILE:
MSMg01no488_h11.b1 PHD_FILE: MSMg01no488_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:24 2005
(694 letters)
>mm_chr2_142909242_142910335
Length = 1094
Score = 1199 bits (620), Expect = 0.0
Identities = 652/673 (96%), Gaps = 17/673 (2%)
Strand = Plus / Minus
Query: 35 gagcaaagctggaaccctgacaccaaccagatgatacaagaggtgtgctatatgactcca 94
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1088 gagcaaagctggaaccctgacaccaaccagatggtacaagaggtgtgctatatgactcca 1029
Query: 95 agagagataaggtctgggaaaaggaagtcatcaatcaagagggattagtactgggaatga 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 agagagataaggtctgggaaaaggaagtcatcaatcaagagggattagtactgggaatga 969
Query: 155 tggcacacacctttaataccaacactcagaaggcagaggcagagagatctgagttcaaga 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 tggcacacacctttaataccaacactcagaaggcagaggcagagagatctgagttcaaga 909
Query: 215 ccagcttaatctacaaagagagttctaagat----------------agaaaccctgtcc 258
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 908 ccagcttaatctacaaagagagttctaagatagtccgggctacatacagaaaccctgtcc 849
Query: 259 tggaaaaacaaaccagaaaaataaaataaaaggagaaattacagagtgggtaagtggaaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tggaaaaacaaaccagaaaaataaaataaaaggagaaattacagagtgggtaagtggaaa 789
Query: 319 aattatcttaaaacttttgcaagccctagatgctacctggaacattgcctttcatgacat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 788 aattatcttaaaacttttgcaagccctagatgctacctggaacattgcctttcctgacat 729
Query: 379 aaaatgagctagaataatccatgatgtttttttgatatgatttatcttgtgtgagttcca 438
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 728 aaaatgagctagaataatccatgatgttcttttgatatgatttatcttgtgtgagttcca 669
Query: 439 taaaaatttgtcaaaatatattcactcaaagtcacagtggtgacagcagaaaaaagatcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 taaaaatttgtcaaaatatattcactcaaagtcacagtggtgacagcagaaaaaagatcc 609
Query: 499 aagtctctgacttgtcctaaggattctccttacttctttagtcatatttacaggataatc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aagtctctgacttgtcctaaggattctccttacttctttagtcatatttacaggataatc 549
Query: 559 agatcacagaaaactgggtgggtaaccccatgctaagtccccaaaactatctttacccaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agatcacagaaaactgggtgggtaaccccatgctaagtccccaaaactatctttacccaa 489
Query: 619 aggttaaaaggttaagatganagagagagagagagagagagagagagagagagagagaga 678
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggttaaaaggttaagatgagagagagagagagagagagagagagagagagagagagaga 429
Query: 679 gagagaggagaga 691
|||||| ||||||
Sbjct: 428 gagaga-gagaga 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_h11.g1 MSMg01no488_h11.g1 CHROMAT_FILE:
MSMg01no488_h11.g1 PHD_FILE: MSMg01no488_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:24 2005
(559 letters)
>mm_chr2_142745518_142746475
Length = 958
Score = 973 bits (503), Expect = 0.0
Identities = 545/559 (97%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 1 tgggaatccagatgcatgctaccatttccagcttttcacttgggttccaggaattgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaatccagatgcatgctaccatttccagcttttcacttgggttccaggaattgaact 260
Query: 61 tgggtggtgtgcacctacaatttttaccctagagccctttcactggcttctcttttccat 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtggtgtgcacctagaatttttaccctagagccctttcactggcttctcttttccat 320
Query: 121 tacctgttctgctttcctattcttccttgagagtatgaagaatattttgtgtccttctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctgttctgctttcctattcttccttgagagtatgaagaatattttgtgtccttctga 380
Query: 181 gtgtgtctgattatcctcaatcttgttctttagaaagtattgtaaactttataaatagaa 240
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 atgtgtctgattatccccaatcttgttctttagaaattattgtaaactttataaatagaa 440
Query: 241 cttctggctaagatatgtctaaggggtaaatgtgtgtgaggtcctggattcaaatcccag 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctggctaagatatatctaaggggtaaatgtgtgtgaggtcctggattcaaatcccag 500
Query: 301 aaattgagtggatagaaggagaggaggagacatcatattgcacatattggaagtggagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattgagtggatagaaggagaggaggagacatcatattgcacatattggaagtggagta 560
Query: 361 tgtttgactgttagtaatgagaaaggcaaaaggacagtttgccatgacactgtgtgttca 420
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct: 561 tgtttgactgttagtaatgagaaaggcaaaaggactgttcgccatggcactgtgtgttca 620
Query: 421 ctgagctggtataaagcaaactttcacaggggttctcagcgttactggtagatggtccaa 480
|||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 621 ctgagcaggtataaagcaaactttcacaggggttctcagcattactgttagatggtccaa 680
Query: 481 cacagggacaacataacagctagctatctaggcagcaagactctgtagcctacctaacaa 540
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 681 cacagggacaacataacagctagatatctaggcggcaagactctgtagcctac-taacaa 739
Query: 541 agtcagttactaatgaggt 559
|||||||||||||||||||
Sbjct: 740 agtcagttactaatgaggt 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
