Query= MSMg01no488_j09.b1 MSMg01no488_j09.b1 CHROMAT_FILE:
MSMg01no488_j09.b1 PHD_FILE: MSMg01no488_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:33 2005
(634 letters)
>mm_chr2_13326720_13327752
Length = 1033
Score = 1164 bits (602), Expect = 0.0
Identities = 626/634 (98%), Gaps = 1/634 (0%)
Strand = Plus / Plus
Query: 1 gaatggacattttggtatcttccacaaatgtgatattctttaaagacttaatctgtctta 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 201 gaatggacattttggtatcttccacgaatgtgatattctttaaagacttaatctgtttta 260
Query: 61 ctacttttgtatagttagataagaatttgaatcatacaactgtaagtatcagtctaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacttttgtatagttagataagaatttgaatcatacaactgtaagtatcagtctaataa 320
Query: 121 tttcctgcagtaaagggtttgaatcactttgtggtcatcctgtaatgtgggaacttagtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tttcctgcagtaaagggtttgaatcactttgtggtcatcctgtaatgtgggaacctagtt 380
Query: 181 gttgtcttgttcaagctcataataaatctcagatttctgaatgttgacctgcctcatcaa 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gttgtcttgttcaagctcataataaatctcagatttctgaatgatgacctgcctcatcaa 440
Query: 241 attctcaagcagttgttcatcctactgtggggatggtcatcagaggcttaaaatgagaag 300
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 441 attctcaagcagttgttcatcctactgtgggg-tgatcatcagaggcttaaaatgagaag 499
Query: 301 cagagttcaataagctgttcactgtttggtacaaaatccatgatttttaaataaatggat 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 cagagttcaataagctgttcactgtttggtactaaatccatgatttttaaataaatggat 559
Query: 361 catgatagagttcgttcccaggtttattaccttacctctcttggttttgtgttgtaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catgatagagttcgttcccaggtttattaccttacctctcttggttttgtgttgtaaaca 619
Query: 421 ctcttgcttaactacctgtatttgtgttgtaaacactcttgcttaactacctgtatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcttgcttaactacctgtatttgtgttgtaaacactcttgcttaactacctgtatttct 679
Query: 481 tgtcaggttcctagcatactacatgcactgtctagtttaacctcaacttcacacaacctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtcaggttcctagcatactacatgcactgtctagtttaacctcaacttcacacaacctg 739
Query: 541 gagacaattgggaagatggattctaaatctaaaactgcccttaccagattggcttctggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gagacaattgggaagatggattctaaatctaaaactgcccttaccagattggcttctggg 799
Query: 601 taaacccatggagcattatcttaattaatgagtg 634
|||||||||||||||||||||| |||||||||||
Sbjct: 800 taaacccatggagcattatcttcattaatgagtg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1033
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1023
Effective search space: 638352
Effective search space used: 638352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_j09.g1 MSMg01no488_j09.g1 CHROMAT_FILE:
MSMg01no488_j09.g1 PHD_FILE: MSMg01no488_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:33 2005
(661 letters)
>mm_chr2_13490181_13491241
Length = 1061
Score = 1162 bits (601), Expect = 0.0
Identities = 637/649 (98%), Gaps = 3/649 (0%)
Strand = Plus / Minus
Query: 1 cactgtggtttctgaggagaaaggagcacttgttgctacatgttttccaggatgaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cactgtggtttctgaggagaaaggagcacttgttgctacatgttttccaggatgaactgg 588
Query: 61 agagacaggcttgacaactgtttgtaggagattaaaggaaactgaagggaaggtgtttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agagacaggcttgacaactgtttgtaggagattaaaggaaactgaagggaaggtgtttct 528
Query: 121 tagaggctgaagttagaggaaagacagaagataacatgccttggggctttccagagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 527 tagaggctgaagttagaggaaagacagaagataacatgccttggggctttccagacagag 468
Query: 181 ccatttaaaatgagcatattctaggcagaacaatttaggtgggaaattaatttgtggcaa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccatttaaaattagcatattctaggcagaacaatttaggtgggaaattaatttgtggcaa 408
Query: 241 accattttttattaaggtcacccaccaagctggctgtttactgctctcctcaatgcagat 300
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 407 accattctttattaaggtcacccaccaagctggctgtttactgctctccttaatgcagat 348
Query: 301 taacatctcatagaggtgaggcagagctgtatgcatgctcaacaccactcaccaggatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 taacatctcatagaggtgaggcagagctgtatgcatgctcaacaccactcaccaggatag 288
Query: 361 ctcattcctgctggttgtctattacttcctgctatctgttttcagtgtgttggttcctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctcattcctgctggttgtctattacttcctgctatctgttttcagtgtgttggttcctat 228
Query: 421 ggatacaataaatcttggtgttgagtgcctgggccaccttgggcacaaactctgcagaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ggatacaataaatcttggtgttgagtgcctgggccaccttgggcacaaactctgcagaca 168
Query: 481 gtaccatggtccccagaggactctccccccccacacacacacacaccccaagaaccctag 540
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct: 167 gtcccatggtccccagaggactctcccccccccca-acacacacaccccaagaactctag 109
Query: 541 catgcccaggatcttaggatcactggtaagtgaaacacaacatctgttacaacagaacta 600
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 108 catgcctaggatcttaggatcactggtaagtggaacacaacatctgttacaacagaacta 49
Query: 601 ggagtgcctggggccagcaggagcagggaaacaggaaccc-agcctgac 648
|||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 48 ggagtgcctggggccagcaggagcagggaaacaggaacccca-cctgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
