Query= MSMg01no488_m19.b1 MSMg01no488_m19.b1 CHROMAT_FILE:
MSMg01no488_m19.b1 PHD_FILE: MSMg01no488_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:49 2005
(665 letters)
>mm_chr2_116477295_116478359
Length = 1065
Score = 1263 bits (653), Expect = 0.0
Identities = 662/665 (99%)
Strand = Plus / Plus
Query: 1 aaggctaagacaaggaaaggaacctccctgcctgcgcgtcatagcaagaaactcctgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctaagacaaggaaaggaacctccctgcctgcgcgtcatagcaagaaactcctgccc 260
Query: 61 ctccaagcagaggcatttccaaccttacatgtcagtcagtcaaggtagtttaaaatacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaagcagaggcatttccaaccttacatgtcagtcagtcaaggtagtttaaaatacct 320
Query: 121 ggtctcctaaggccagggtgtcattatagatttagcactactaggggcctctctttgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctcctaaggccagggtgtcattatagatttagcactactaggggcctctctttgtca 380
Query: 181 cacaatgaagcaatatggctaattaacactcactagggagcctgagataatgatgcctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaatgaagcaatatggctaattaacactcactagggagcctgagataatgatgcctct 440
Query: 241 ctcttcttatagccaattaccccaaatattcagattacctacctactatttcactgaaag 300
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttcctagagccaattaccccaaatattcagattacctacctactatttcactgaaag 500
Query: 301 aagtgtctctggaatttttttaaaacttgggcattatgtatcatgtaacgtcacattatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgtctctggaatttttttaaaacttgggcattatgtatcatgtaacgtcacattatc 560
Query: 361 tgatgttgggtcacaggctgacagcttacaatgagggacatgctgaatatattgggtagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgttgggtcacaggctgacagcttacaatgagggacatgctgaatatattgggtagt 620
Query: 421 taatacctgccgaattaacaaggcaaccaactttgcaaagaaagaaactctgaaaaatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatacctgccgaattaacaaggcaaccaactttgcaaagaaagaaactctgaaaaatac 680
Query: 481 ctgccatacctcctgggctatctatagaacgaacttgcctgattcactccgccagctacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgccatacctcctgggctatctatagaacgaacttgcctgattcactccgccagctacc 740
Query: 541 actgtgtgtcactgttgtttcttgcaaaggtccatggaaaggtatttgtccacagagatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgtgtgtcactgttgtttcttgcaaaggtccatggaaaggtatttgtccacagagatg 800
Query: 601 tagacaattgatgggcctggtgcagaatccttaacagacactggttcgcagcttctattt 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 tagacaattgatgggcctggtgcagaatccttaacagacactcgttcgcagcttctattt 860
Query: 661 ttgtg 665
|||||
Sbjct: 861 ttgtg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m19.g1 MSMg01no488_m19.g1 CHROMAT_FILE:
MSMg01no488_m19.g1 PHD_FILE: MSMg01no488_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:49 2005
(676 letters)
>mm_chr2_116627529_116628605
Length = 1077
Score = 1286 bits (665), Expect = 0.0
Identities = 674/677 (99%), Gaps = 1/677 (0%)
Strand = Plus / Minus
Query: 1 attctctgaagagcttaaagctatttacaattttttattacatcagataactagttgtac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 877 attctctgaagagcttaaagctatttacaattttttattacatcagataactagttatac 818
Query: 61 aactt-atttattttgttagtcattcttagagtaagtaagcacaaaataaatttgtatgg 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aacttaatttattttgttagtcattcttagagtaagtaagcacaaaataaatttgtatgg 758
Query: 120 atgtttaaaaagtcatgtgatgctagacccacaccctgacattctgacttggaattcgag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 atgtttaaaaagtcatgtgatgctagacccacaccctgacattctgacttggaattcgag 698
Query: 180 gaaggctccaaagttcatgtttttacaacttcttacacgattttgatgggtaccttgtcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaaggctccaaagttcatgtttttacaacttcttacacgattttgatgggtaccttgtcc 638
Query: 240 taagtactcttgggatgggtatttaagaatttaagaagaatcaattactttctgtttttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 taagtactcttgggatgggtatttaagaatttaagaagaatcaattactttctgtttttg 578
Query: 300 aaactttgccaatgatggctatacctgaaaagactggaatttttaggctgaaaaagtttt 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaactttgccagtgatggctatacctgaaaagactggaatttttaggctgaaaaagtttt 518
Query: 360 caaatatgtctatttgtacacgaatctgaacattctgctggaaacaaagttggtgtaagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caaatatgtctatttgtacacgaatctgaacattctgctggaaacaaagttggtgtaagt 458
Query: 420 gacaaagtgtgagaaaagtcaggagcctggctccagttcacagagactgttcggtctaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gacaaagtgtgagaaaagtcaggagcctggctccagttcacagagactgttcggtctaag 398
Query: 480 ctccattttgggaggcagtttttgaaagtgacgtccacagtcacctttgatcaaaaggca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctccattttgggaggcagtttttgaaagtgacgtccacagtcacctttgatcaaaaggca 338
Query: 540 taggatgtttctgggtgaggaaaaggaacagcaggctccagggatgctatgtcagagagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taggatgtttctgggtgaggaaaaggaacagcaggctccagggatgctatgtcagagagg 278
Query: 600 agagaacaagaggaaatagcagatctgagttttcctatctcggcttgatggtcatatcac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agagaacaagaggaaatagcagatctgagttttcctatctcggcttgatggtcatatcac 218
Query: 660 tccgtcccgctcacata 676
|||||||||||||||||
Sbjct: 217 tccgtcccgctcacata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1077
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1067
Effective search space: 710622
Effective search space used: 710622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
