MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-488N02
Chromosome	2 (Build37)
Map Location	74,621,945 - 74,622,597
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Atf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
Downstream gene	Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Atf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11909 MGI:109349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Atp5g3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228033 MGI:2442035
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667729 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667729
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 16 Proteins pseudo : _no_value

name	LOC100040172 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040172
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Lnp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69605 MGI:1918115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040519 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040519
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 90 ESTs, 6 Proteins

name	Evx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14029 MGI:95462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15433 MGI:96205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15432 MGI:96204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15431 MGI:96203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15430 MGI:96202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15438 MGI:96210
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15437 MGI:96209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700109F18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73429 MGI:1923875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Hoxd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15434 MGI:96207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15436 MGI:96208
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667804 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667804
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Hoxd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15429 MGI:96201
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53375 MGI:1859652
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667817 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	A330043C09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329430 MGI:2685671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC667739 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1686 ESTs, 7 Proteins

name	LOC545423 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545423
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1081 ESTs, 10 Proteins

name	LOC100040324 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040324
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC667828 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Hnrpa3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229279 MGI:1917171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Nfe2l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18024 MGI:108420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E030042O20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320474 MGI:2444099
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	Atf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68799838 GeneID:11909 MGI:109349
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activating transcription factor 2 transcript_id : NM_009715.2

name	Atf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68799915 GeneID:11909 MGI:109349
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activating transcription factor 2 transcript_id : NM_001025093.1

name	Atp5g3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348625 GeneID:228033 MGI:2442035
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 3 transcript_id : NM_175015.2

name	LOC100040172 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249826 GeneID:100040172
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100040172 transcript_id : XM_001474208.1

name	Lnp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872192 GeneID:69605 MGI:1918115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : limb and neural patterns transcript_id : NM_027133.2

name	LOC100040519 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249844 GeneID:100040519
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 88 ESTs, 6 Proteins product : similar to L23 mitochondrial-related protein, transcript variant 2 transcript_id : XM_001475211.1

name	LOC100040519 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249842 GeneID:100040519
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 89 ESTs, 6 Proteins product : similar to L23 mitochondrial-related protein, transcript variant 1 transcript_id : XM_001475192.1

name	Evx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131041 GeneID:14029 MGI:95462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : even skipped homeotic gene 2 homolog transcript_id : NM_007967.2

name	Hoxd13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120586993 GeneID:15433 MGI:96205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D13 transcript_id : NM_008275.2

name	Hoxd12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121583907 GeneID:15432 MGI:96204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D12 transcript_id : NM_008274.2

name	Hoxd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680256 GeneID:15431 MGI:96203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D11 transcript_id : NM_008273.1

name	Hoxd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802469 GeneID:15430 MGI:96202
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D10 transcript_id : NM_013554.3

name	Hoxd9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542960 GeneID:15438 MGI:96210
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D9 transcript_id : NM_013555.2

name	Hoxd8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112807183 GeneID:15437 MGI:96209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D8 transcript_id : NM_008276.2

name	1700109F18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367053 GeneID:73429 MGI:1923875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 1700109F18 gene transcript_id : XM_992510.1

name	Hoxd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126517501 GeneID:15434 MGI:96207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D3 transcript_id : NM_010468.2

name	Hoxd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754237 GeneID:15436 MGI:96208
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D4 transcript_id : NM_010469.1

name	LOC667804 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94367058 GeneID:667804
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : similar to hCG17447 transcript_id : XM_992575.1

name	Hoxd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112983631 GeneID:15429 MGI:96201
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box D1 transcript_id : NM_010467.2

name	Mtx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380213 GeneID:53375 MGI:1859652
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : metaxin 2 transcript_id : NM_016804.3

name	A330043C09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149249846 GeneID:329430 MGI:2685671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA A330043C09 gene transcript_id : XM_001475470.1

name	LOC667739 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249848 GeneID:667739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1686 ESTs, 7 Proteins product : similar to ribosomal protein S6, transcript variant 2 transcript_id : XM_001003926.2

name	LOC545423 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249849 GeneID:545423
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1081 ESTs, 10 Proteins product : similar to ribosomal protein L21 transcript_id : XM_619762.4

name	LOC100040324 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249836 GeneID:100040324
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Ubtf protein transcript_id : XM_001474502.1

name	Hnrpa3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37674276 GeneID:229279 MGI:1917171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein A3 transcript_id : NM_198090.1

name	Hnrpa3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31559915 GeneID:229279 MGI:1917171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein A3 transcript_id : NM_146130.2

name	Nfe2l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76573877 GeneID:18024 MGI:108420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor, erythroid derived 2, like 2 transcript_id : NM_010902.3

name	E030042O20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149249851 GeneID:320474 MGI:2444099
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : RIKEN cDNA E030042O20 gene transcript_id : XM_001475569.1

name	Atf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68799916 CCDS:CCDS16134.1 GeneID:11909 MGI:109349
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : activating transcription factor 2 isoform 1 protein_id : NP_001020264.1

name	Atf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468883 CCDS:CCDS16135.1 GeneID:11909 MGI:109349
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : activating transcription factor 2 isoform 2 protein_id : NP_033845.1

name	Atp5g3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27923925 CCDS:CCDS16136.1 GeneID:228033 MGI:2442035
definition	GO_component : GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA] GO_process : GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 3 protein_id : NP_778180.1

name	LOC100040172 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249827 GeneID:100040172
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474258.1

name	Lnp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32441290 CCDS:CCDS16137.1 GeneID:69605 MGI:1918115
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 note : lunapark product : limb and neural patterns protein_id : NP_081409.1

name	LOC100040519 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249843 GeneID:100040519
definition	codon_start : 1 product : similar to L23 mitochondrial-related protein isoform 1 protein_id : XP_001475242.1

name	LOC100040519 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249845 GeneID:100040519
definition	codon_start : 1 product : similar to L23 mitochondrial-related protein isoform 2 protein_id : XP_001475261.1

name	Evx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679713 CCDS:CCDS16138.1 GeneID:14029 MGI:95462
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : even skipped homeotic gene 2 homolog protein_id : NP_031993.1

name	Hoxd13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120586994 CCDS:CCDS16139.1 GeneID:15433 MGI:96205
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0042127 - regulation of cell proliferation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeobox D13 protein_id : NP_032301.2

name	Hoxd12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121583908 GeneID:15432 MGI:96204
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D12 protein_id : NP_032300.2

name	Hoxd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680257 CCDS:CCDS16140.1 GeneID:15431 MGI:96203
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001759 - induction of an organ [Evidence IGI]; GO:0001656 - metanephros development [Evidence IGI]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D11 protein_id : NP_032299.1

name	Hoxd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560501 CCDS:CCDS16141.1 GeneID:15430 MGI:96202
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D10 protein_id : NP_038582.2

name	Hoxd9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305153 CCDS:CCDS16142.1 GeneID:15438 MGI:96210
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D9 protein_id : NP_038583.1

name	Hoxd8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112807184 CCDS:CCDS16143.1 GeneID:15437 MGI:96209
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D8 protein_id : NP_032302.2

name	1700109F18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94367054 GeneID:73429 MGI:1923875
definition	codon_start : 1 product : hypothetical protein LOC73429 protein_id : XP_997604.1

name	Hoxd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754238 CCDS:CCDS16145.1 GeneID:15436 MGI:96208
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : homeo box D4 protein_id : NP_034599.1

name	Hoxd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126517502 GeneID:15434 MGI:96207
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D3 protein_id : NP_034598.2

name	LOC667804 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94367059 GeneID:667804
definition	codon_start : 1 product : similar to hCG17447 protein_id : XP_997669.1

name	Hoxd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112983632 CCDS:CCDS16147.1 GeneID:15429 MGI:96201
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box D1 protein_id : NP_034597.2

name	Mtx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543274 CCDS:CCDS16148.1 GeneID:53375 MGI:1859652
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0019867 - outer membrane [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : metaxin 2 protein_id : NP_058084.2

name	A330043C09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149249847 GeneID:329430 MGI:2685671
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475520.1

name	LOC667739 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94367038 GeneID:667739
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001003926.1

name	LOC545423 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:63487024 GeneID:545423
definition	codon_start : 1 product : hypothetical protein protein_id : XP_619762.1

name	LOC100040324 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249837 GeneID:100040324
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474552.1

name	Hnrpa3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37674277 CCDS:CCDS16149.1 GeneID:229279 MGI:1917171
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant a product : heterogeneous nuclear ribonucleoprotein A3 isoform a protein_id : NP_932758.1

name	Hnrpa3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559916 CCDS:CCDS16149.1 GeneID:229279 MGI:1917171
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant b product : heterogeneous nuclear ribonucleoprotein A3 isoform b protein_id : NP_666242.2

name	Nfe2l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754832 CCDS:CCDS16150.1 GeneID:18024 MGI:108420
definition	GO_component : GO:0005737 - cytoplasm [Evidence IPI]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA] [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IGI]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0045995 - regulation of embryonic development [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0030968 - unfolded protein response [Evidence IDA] codon_start : 1 product : nuclear factor, erythroid derived 2, like 2 protein_id : NP_035032.1

name	E030042O20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149249852 GeneID:320474 MGI:2444099
definition	codon_start : 1 product : hypothetical protein LOC320474 protein_id : XP_001475619.1

name	LOC667817 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667817
definition	number : 2 pseudo : _no_value

name	LOC667817 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667817
definition	number : 1 pseudo : _no_value

name	LOC667828 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667828
definition	number : 3 pseudo : _no_value

name	LOC667828 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667828
definition	number : 2 pseudo : _no_value

name	LOC667828 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667828
definition	number : 1 pseudo : _no_value

name	LOC667729 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249824 GeneID:667729
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 16 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_031598.1

clone name	MSMg01-363P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-488N02.T7 (MSMg01no488_n02.b1)	MSMg01-488N02.TJ (MSMg01no488_n02.g1)
ACC	AG567450	AG567451
length	748	753
length of high quality (start - end)	640 (44 - 683)	653 (76 - 728)
definition	CHROMAT_FILE: MSMg01no488_n02.b1 PHD_FILE: MSMg01no488_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:50 2005	CHROMAT_FILE: MSMg01no488_n02.g1 PHD_FILE: MSMg01no488_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:50 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA TTCAAATTTTTCCAACCACCTGTAATGAGACCTGATGCCCTCTTCTGGTG CGTCTGAAGTCAACTACAGTGTACTTATGTATAATAATAAATAAATCTTT GGGCCTGAGCCAGCAGAGCTGGCCATAGTGAGCAGGGTTGACTGGAGCAA GCAGAGTTCCTAAAAATTAAATTCCCAACAGCCACATGAAGGCTCACAAC CATCTGTACAGTTACAGTGTAGGCACATACACAAAATAAATAAATAAATC TTTAAAAAAAAAAGAAGCATTAAGAATGTGTAGGTAGGGATGGAGAGATA TCGGAATTAAAGAGTGTGTTCTGTCCTTGCAGACAACCCAAGTTCAGTTC CAAATACCCATGTTGGGTGGCTTTCTACAGCTTCAGCTGTAGAAAGATAG GACACCTTTGACCTCCACAGAAACCTGTGTTCATGTGCACAGGCACCAGG CAGACACACTTAATTAAAAATAATTTAAACAGTAAATCTTTTACAAAGAA CATGTAGTCTGGTGCTAGGAAAGATGCACCTATATACAATACTAGCACAG CTGTCATGGGAGTAACCAACTGCTCTCTCTTTAGATTTGAGACCCACTCC ATAAGGACTGTTCCGTATTTGGAACTATAAATCCACTAAAATTCCATTGT AGAGAATGTCACATAACTGAAAGGAACCCCGATTCTGCTGTTGAGCTA	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAGAACCTTGTTTCCAAATGA AAAAAGAAATCCTAAAAGAACTTCATGAAATGTAAGTTCTGCCTCAGCAA AAAGACCATTCTAGAACATTATCTTTATCAAGGGTGGGTCATCTCGAATG AAACACAGTTGCAGTTTGTTTTGTTTTGTTTTTCTTGAGATGGAGATTTT TTTCCCATGTCCCACCTTCGGCAAATGTATTGGAATAATGAAACTGTCAA TATATGAGGTCGTCTATGGGGCACATCTGAATTGATTATGTCTTCTCAAA GCCTGAAATCTGAATGAAGAGGTTTTTTAATAAGGAGGTCACAGACTACA GAGATCTTCATAGAACATAAAATGCATGAGGGGATGTATTGTAATGTGAA TATGACTAATTGACCACCTTATTAGAGAAGCATTTATCTTGAGATGAAAA ATGGCCGCACTGTTGTTTGACATTTGGATTGTCGATGGCTTGACCAGGAG AAACCTTGGTTGGAAACTCCAGAGGCAAAGGCAGTTCAAGGGATCAGTTG CCTGCCAAAGGTCACTGGTGGCATCATGGGGCTCTTATTTTTCACAGCCT TCAGACAAGCATCTGATACCACTTTCATCCCGGTGAGGGGAAAATAAAAT GCTGCCCAGAGTCATCTTTTTATTAAAAATAAAACCATTAGTCAATGTTC CAA
quality values	Open. Hide. 13 13 13 17 22 30 47 39 33 32 30 28 28 28 30 28 26 23 30 30 30 43 44 22 21 15 12 13 7 6 6 8 8 8 8 12 12 12 16 10 10 10 10 13 22 30 34 31 31 31 31 37 33 33 21 21 11 11 9 9 8 8 10 10 19 29 30 37 37 37 37 32 37 33 33 38 42 42 47 48 48 47 47 50 50 53 50 57 48 57 54 54 54 54 54 48 59 59 59 54 57 54 57 57 57 57 59 59 50 47 42 42 30 32 37 44 37 43 44 46 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 47 50 50 57 57 59 59 57 48 48 50 50 50 47 47 52 52 50 50 52 57 57 57 57 57 59 57 52 52 43 59 59 68 68 57 57 52 52 52 59 59 68 68 57 57 57 57 57 57 57 57 52 52 52 59 57 57 52 57 57 57 57 54 57 57 57 59 59 68 68 68 68 68 68 68 57 57 57 57 57 52 52 57 57 57 57 52 52 52 52 52 62 62 68 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 52 52 62 62 68 68 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 52 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 44 44 35 35 43 43 43 43 31 39 44 44 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 52 52 62 62 62 62 62 52 62 52 52 52 62 62 62 52 52 62 62 62 52 62 52 59 59 52 57 45 52 57 57 59 57 57 57 57 57 57 57 68 68 59 59 57 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 52 52 57 57 57 57 57 59 59 59 59 57 68 68 68 68 57 57 57 57 52 52 52 52 59 57 57 57 54 54 57 57 52 52 57 57 59 57 57 57 57 57 57 59 59 59 57 50 48 48 57 57 59 57 57 48 48 48 57 57 57 44 43 43 39 59 42 47 43 57 57 59 43 43 47 47 57 59 59 68 68 57 57 57 57 57 57 57 57 54 54 54 68 68 54 57 48 48 48 48 48 48 48 54 57 54 53 48 48 43 43 43 43 43 48 48 48 48 48 57 47 57 34 34 23 32 34 59 59 59 47 59 43 41 41 41 41 41 39 40 36 32 32 34 33 36 37 37 39 39 43 37 37 30 30 30 37 37 43 43 43 43 36 43 43 46 46 46 40 40 39 37 37 39 29 36 36 35 39 39 59 47 46 46 48 48 48 48 43 43 40 43 43 43 43 46 46 41 37 26 26 18 26 26 34 34 34 34 28 22 22 20 22 25 30 34 23 23 23 34 32 35 32 39 37 37 32 31 31 31 32 25 25 32 32 32 41 37 37 37 37 41 37 37 36 32 29 29 23 17 11 11 11 22 22 28 18 19 19 21 21 17 17 12 13 9 11 13 13 9 12 12 19 19 21 21 12 12 12 25 25 35 31 32 25 17 11 9 9 8 9 8 10 13 13 23 21 23 16 17 11 13 13 22 22 26 19 18 18 25 18 18 19 19 18	Open. Hide. 8 8 9 13 12 8 8 8 8 15 20 37 39 39 41 37 37 41 37 37 41 42 37 39 50 50 42 47 27 21 9 8 8 14 9 9 9 10 11 12 10 10 6 6 8 10 21 34 37 37 39 44 37 37 42 39 25 11 8 6 6 6 6 7 9 13 18 22 23 18 22 27 33 33 33 33 33 35 35 57 57 43 43 43 39 47 47 57 59 59 59 37 37 34 34 36 42 59 68 68 68 68 68 68 68 68 68 54 48 48 47 47 48 59 59 59 59 59 57 57 47 57 57 47 48 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 47 47 47 44 42 37 50 50 57 57 57 68 57 57 57 50 50 57 57 57 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 54 57 57 68 68 68 68 59 59 52 52 57 57 57 57 52 52 57 57 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 57 54 54 44 44 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 52 52 52 52 62 62 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 54 54 62 62 68 68 68 68 62 62 62 62 52 52 52 52 62 62 62 62 62 43 43 29 29 29 35 35 43 43 52 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 52 52 62 62 52 62 52 62 62 62 62 52 62 62 62 62 62 62 62 57 39 39 44 44 59 59 57 57 57 59 57 57 57 59 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 54 54 54 54 54 57 57 57 57 57 57 57 57 59 59 59 52 52 52 59 59 59 59 54 54 54 50 50 54 57 57 59 59 68 68 68 68 57 57 57 57 54 54 57 57 57 57 57 57 57 57 59 59 57 57 57 57 59 59 59 57 59 57 57 57 57 57 46 43 43 43 43 59 59 59 59 68 68 57 57 57 57 54 48 48 48 48 42 43 42 43 43 43 43 40 48 57 48 48 48 48 48 47 57 39 37 32 28 37 31 39 39 39 39 39 39 36 34 38 39 37 34 25 33 33 39 43 37 37 30 28 28 33 34 39 37 35 31 32 41 41 41 41 41 39 39 31 31 35 36 37 39 34 39 39 43 48 46 34 37 33 31 35 43 34 41 44 36 34 28 33 33 47 39 48 48 59 37 37 36 32 28 28 30 26 24 30 30 32 23 34 28 37 30 32 37 37 37 35 39 34 36 28 28 28 31 27 37 37 37 31 33 28 28 31 37 37 30 24 20 11 11 14 11 16 21 30 37 31 30 22 22 22 30 30 25 30 30 37 37 39 31 28 28 15 15 13 15 15 21 21 23 23 26 29 28 27 25 32 26 15 11 11 12 12 10 16 28 28 19 16 16 15 15 23 34 28 31 33 31 29 19 21 10 10 10 16 12 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no488_n02.g1 MSMg01no488_n02.g1 CHROMAT_FILE:
MSMg01no488_n02.g1 PHD_FILE: MSMg01no488_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:50 2005
         (653 letters)



>mm_chr2_74621745_74622797
          Length = 1053

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggagaaccttgtttccaaatgaaaaaagaaatcctaaaagaacttcatgaaatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 caaggagaaccttgtttccaaatgaaaaaagaaatcctaaaagaacttcatgaaatgtaa 794

                                                                       
Query: 61  gttctgcctcagcaaaaagaccattctagaacattatctttatcaagggtgggtcatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gttctgcctcagcaaaaagaccattctagaacattatctttatcaagggtgggtcatctc 734

                                                                       
Query: 121 gaatgaaacacagttgcagtttgttttgttttgtttttcttgagatggagatttttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaatgaaacacagttgcagtttgttttgttttgtttttcttgagatggagatttttttcc 674

                                                                       
Query: 181 catgtcccaccttcggcaaatgtattggaataatgaaactgtcaatatatgaggtcgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 catgtcccaccttcggcaaatgtattggaataatgaaactgtcaatatatgaggtcgtct 614

                                                                       
Query: 241 atggggcacatctgaattgattatgtcttctcaaagcctgaaatctgaatgaagaggttt 300
           ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 613 atggggcacatctgaattgattacgtgttctcatagcctgaaatctgaatgaagaggttt 554

                                                                       
Query: 301 tttaataaggaggtcacagactacagagatcttcatagaacataaaatgcatgaggggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttaataaggaggtcacagactacagagatcttcatagaacataaaatgcatgaggggat 494

                                                                       
Query: 361 gtattgtaatgtgaatatgactaattgaccaccttattagagaagcatttatcttgagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtattgtaatgtgaatatgactaattgaccaccttattagagaagcatttatcttgagat 434

                                                                       
Query: 421 gaaaaatggccgcactgttgtttgacatttggattgtcgatggcttgaccaggagaaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaaaaatggccgcactgttgtttgacatttggattgtcgatggcttgaccaggagaaacc 374

                                                                       
Query: 481 ttggttggaaactccagaggcaaaggcagttcaagggatcagttgcctgccaaaggtcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttggttggaaactccagaggcaaaggcagttcaagggatcagttgcctgccaaaggtcac 314

                                                                       
Query: 541 tggtggcatcatggggctcttatttttcacagccttcagacaagcatctgataccacttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggtggcatcatggggctcttatttttcacagccttcagacaagcatctgataccacttt 254

                                                                
Query: 601 catcccggtgaggggaaaataaaatgctgcccagagtcatctttttattaaaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 catcccggtgaggggaaaataaaatgctgcccagagtcatctttttattaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information