Query= MSMg01no488_p03.b1 MSMg01no488_p03.b1 CHROMAT_FILE:
MSMg01no488_p03.b1 PHD_FILE: MSMg01no488_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:00 2005
(393 letters)
>mm_chr2_84512744_84513536
Length = 793
Score = 690 bits (357), Expect = 0.0
Identities = 384/393 (97%)
Strand = Plus / Plus
Query: 1 taattggctacagaatgaatacaggcacttcacagaccaagtctttatcatttttcctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taattggctacagaatgaatacaggcacttcacagaccaagtctttatcatttttcctca 260
Query: 61 gcattagcagcatataacataaacctgctgacccaccacgtgacatcctgtaactaatct 120
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 261 gcattagcagcatataacataaacctgctgacttaataggtgacatcctgtaactaatct 320
Query: 121 acatcctcaaaaaacagtgggccagtgtcagaattcgggattaaacccagactaagaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcctcaaaaaacagtgggccagtgtcagaattcgggattaaacccagactaagaata 380
Query: 181 aaacccaatcaatgttgtgtatctttctccaaaccactgcccatgtgtttcacctacctc 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcccaatcactgttgtgtatctttctccaaaccactgcccatgtgtttcacctacctc 440
Query: 241 agaaaaggtccaagacacagctcgtcctttcttgtcaatctgcggccgacgaatgacctc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaaggtccaagagacagctcgtcctttcttgtcaatctgcggccgacgaatgacctc 500
Query: 301 cttgccgccttggaacagaatcagggtagggagctgtctggtgaggggtgatgtgctcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgccgccttggaacagaatcagggtagggagctgtctggtgaggggtgatgtgctcac 560
Query: 361 tttgtacctacagggccagacaaggactctgag 393
||||||||||||||||||||| |||||||||||
Sbjct: 561 tttgtacctacagggccagacgaggactctgag 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_p03.g1 MSMg01no488_p03.g1 CHROMAT_FILE:
MSMg01no488_p03.g1 PHD_FILE: MSMg01no488_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:00 2005
(626 letters)
>mm_chr2_84706327_84707353
Length = 1027
Score = 1112 bits (575), Expect = 0.0
Identities = 614/635 (96%), Gaps = 17/635 (2%)
Strand = Plus / Minus
Query: 1 ctgtgtagacagtgggtacaaataaaagatggaggatgatagagacagacgtgcttgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 ctgtgtagacagtgggtacaaataaaagatggaggatgatagagacagacgtgcttgcct 954
Query: 61 gtaatcccagtactagggtgggtggggcaagagcatagcaatgagttcgaggccagcctg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gtaaacccagtactagggtgggtggggcaagagcatagcaatgagttcgaggccagcctg 894
Query: 121 ggctatatagggagttccaggctaacctgagctagaaattgagatcctgtttaaacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ggctatatagggagttccaggctaacctgagctagaaattgagatcctgtttaaacaaaa 834
Query: 181 acacaagacagatactatgaggagtgaaaaaagagggatccaggtcatataggggtggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 acacaagacagatactatgaggagtgaaaaaagagggatccaggtcatataggggtggga 774
Query: 241 ggtg-----gtttttatgagtctgggaagtagccgggggcaagacttt-acacatgcagg 294
|||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 773 ggtggccaag-----atgagtctgggaagtagccgggggcaagactttaacacatgcagg 719
Query: 295 tatgaccacccatggccacctgagattctgcactgctggacccaaaattcag---aggat 351
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 718 tatgaccacccatggccacctgagattctgcactgctggacccaaaattcagagaaggac 659
Query: 352 attcacagacaaaccctcgctagctttctgaggagaaggaccagagagcaagcgtttcat 411
| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 658 aatcacagacaaaccctcgctagttttct---gagaaggaccagagagcaagcgtttcat 602
Query: 412 tcctcaagaccagtatgcctctatagggtgaatcccaggaatctataggttcgtgtgtgt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcctcaagaccagtatgcctctatagggtgaatcccaggaatctataggttcgtgtgtgt 542
Query: 472 cacctccttaaccagggccctctgcacccgcggggattcagctgtgtccagcatccttct 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cacctccttaaccagggccctctgcacccgcggggattcagctgtgtccagcatccttct 482
Query: 532 gacctgttctctccggcagcccccagtcccagctcatctgcataaagttccaattaacac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacctgttctctccggcagcccccagtcccagctcatctgcataaagttccaattaacac 422
Query: 592 gtttccccagagctgtttgcgatccctgaactcgc 626
|||||||||||||||||||||||||||||||||||
Sbjct: 421 gtttccccagagctgtttgcgatccctgaactcgc 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
