BAC Information

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BAC

Clone NameMSMg01-488P22
Chromosome2 (Build37)
Map Location 126,078,333 - 126,270,677
singlet/doubletdoublet
Overlap geneAtp8b4
Upstream geneDut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488P22.T7 (MSMg01no488_p22.b1)MSMg01-488P22.TJ (MSMg01no488_p22.g1)
ACCAG567585AG567586
length765763
length of high quality
(start - end)		629 (76 - 704)659 (74 - 732)
definitionCHROMAT_FILE: MSMg01no488_p22.b1 PHD_FILE: MSMg01no488_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:04 2005CHROMAT_FILE: MSMg01no488_p22.g1 PHD_FILE: MSMg01no488_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,270,157 - 126,270,677)(126,078,333 - 126,078,991)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAGAGCGCGG
AATTCTTTATTTACCAACCAAACAAACAAACAATGCTTTTATTCTCTAAC
CTGGTATGGTTTGTGTTTTAACCATCCACCCTGCCCCTCACTTCTTGCTC
TTCCTTGTATTATCTCTGTTATAATGTCACAGGGTCTTGCCAGCAAGAAT
AGTCATATGAAACTATTTCTCACCTTTACTCCAGAGCTAAATAAGTACAC
GACATGCATGTCTACATACATAGCTACTTCACTTAAATCTCTACTCAGCA
AGTATCTCCCAAACTCACATGATGCTAGGCGTGGTTCTATATGTTAAGAA
TATAGAAACAAGAAACCAGACACAGCCTTAGCTGTGTAAATTTCCAGAGG
GAAAGACAGTTTAATGGTTTAATGTAATTTCAGGTTTCCTATGCCCAGTG
GGAGGCGCCACACCCATGCACATGTGGTCAGCACCAATTGGACTTAGGGC
ATTAGTTACTGGGTTGAATGCCCTGGGAGGGAGTTGGAAGTAGATCACTA
GTGCAGTGAATATAATGGCCTCTTGCTAGAAGTAGGATTTGTCCCAGATT
GGAAATGATCTGGGTGATCGTAAGGTCTCCATCAAGGTGGGGAAACTGGG
ATAAAATGGAGTTCTGAGAGACAAACAAAAGCCAGCTATTGTGTTTATAT
TTTAGANCAGGTCTTGTTCTATAGCCCAGGCTGATCTTGAGTTCACTATG
TAACCTAGGCTGGAC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGTCTCAGGATGCTGAAAAGCAACA
TCCCAAACCCTAAGCTTCTTGTCATCATTCCCTGTCTAGACTTAGGATCA
AACTCTGAGCCTCATCCATACAAGGTCTGCACCGAACTCCACTCTCAAGC
CTTGATTTGTCTGTTTTGACCACATTTCTATATAACTGTGGTTATTTTCT
TAATGAATTCTTTTTTTATATTTATCTCCTTATTTTATTTCATACATATT
AGTGTTTTGACTGCATTATGTATGCATACTTTGTGCTTGCCTGGTGCCCT
TGGAAGTCAGAAGAGAGTGTCGGATTTCCTGAAGCTGGTTATAGATGGCT
ATGAGCCAGCATGTAGTTTCTGAGAACTGAACCTGGATCCTCTCTGCAAG
AGCAACAAGTGTTCTTAACCACTGAGCCATGCCCACAGCCCTGAACTGCA
GATAGCTTTGCTTTGAAAGCTTGGCTGTGCTTACAGATTCCTTTGAAGTG
TATCATTTTTAAGTTTAATAATTTTAATCAAAACTATACTTTCTAGATGA
GTGTGGCTCGATACAAATACAAAGTAATATTTAAAAAATTTTAGCAGCCA
ACTTTTTTAAATGTAAAATTAAATTTAATGTATACTTTATTTAGCTAAAA
GTATTCCCAAACAAAGATGCTATTTAGTTCATTTTGTATTAGCCAGACAC
TGCTGAGCGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_p22.b1 MSMg01no488_p22.b1 CHROMAT_FILE:
MSMg01no488_p22.b1 PHD_FILE: MSMg01no488_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:04 2005
         (629 letters)



>mm_chr2_126270157_126271185
          Length = 1029

 Score =  992 bits (513), Expect = 0.0
 Identities = 519/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaacaatgcttttattctctaacctggtatggtttgtgttttaaccatccaccctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acaaacaatgcttttattctctaacctggtatggtttgtgttttaaccatccaccctgcc 462

                                                                       
Query: 61  cctcacttcttgctcttccttgtattatctctgttataatgtcacagggtcttgccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cctcacttcttgctcttccttgtattatctctgttataatgtcacagggtcttgccagca 402

                                                                       
Query: 121 agaatagtcatatgaaactatttctcacctttactccagagctaaataagtacacgacat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agaatagttatatgaaactatttctcacctttactccagagctaaataagtacacgacat 342

                                                                       
Query: 181 gcatgtctacatacatagctacttcacttaaatctctactcagcaagtatctcccaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcatgtctacatacatagctacttcacttaaatctctactcagcaagtatctcccaaact 282

                                                                       
Query: 241 cacatgatgctaggcgtggttctatatgttaagaatatagaaacaagaaaccagacacag 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cacaggatgctaggcgtggttctatatgttaagaatatagaaacaagaaaccagacacag 222

                                                                       
Query: 301 ccttagctgtgtaaatttccagagggaaagacagtttaatggtttaatgtaatttcaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ccttagctgtgtaaatttccagagggaaagacagtttaatggtttaatgtaatttcaggt 162

                                                                       
Query: 361 ttcctatgcccagtgggaggcgccacacccatgcacatgtggtcagcaccaattggactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttcctatgcccagtgggaggcgccacacccatgcacatgtggtcagcaccaattggactt 102

                                                                       
Query: 421 agggcattagttactgggttgaatgccctgggagggagttggaagtagatcactagtgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 agggcattagttactgggttgaatgccctgggagggagttggaagtagatcactagtgca 42

                                                    
Query: 481 gtgaatataatggcctcttgctagaagtaggatttgtccca 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gtgaatataatggcctcttgctagaagtaggatttgtccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_p22.g1 MSMg01no488_p22.g1 CHROMAT_FILE:
MSMg01no488_p22.g1 PHD_FILE: MSMg01no488_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:04 2005
         (659 letters)



>mm_chr2_126078133_126079191
          Length = 1059

 Score = 1220 bits (631), Expect = 0.0
 Identities = 652/659 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtctcaggatgctgaaaagcaacatcccaaaccctaagcttcttgtcatcattccct 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtcccaggatgctgaaaagcaacatcccaaaccctaagcttcttgtcatcattccct 260

                                                                       
Query: 61  gtctagacttaggatcaaactctgagcctcatccatacaaggtctgcaccgaactccact 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 261 gtctagacttaggatcaaactctgagcctcatccatacaaggtctacaccgaactcgact 320

                                                                       
Query: 121 ctcaagccttgatttgtctgttttgaccacatttctatataactgtggttattttcttaa 180
           ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaagccttgatttttctgtttcaaccacatttctatataactgtggttattttcttaa 380

                                                                       
Query: 181 tgaattctttttttatatttatctccttattttatttcatacatattagtgttttgactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaattctttttttatatttatctccttattttatttcatacatattagtgttttgactg 440

                                                                       
Query: 241 cattatgtatgcatactttgtgcttgcctggtgcccttggaagtcagaagagagtgtcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattatgtatgcatactttgtgcttgcctggtgcccttggaagtcagaagagagtgtcgg 500

                                                                       
Query: 301 atttcctgaagctggttatagatggctatgagccagcatgtagtttctgagaactgaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttcctgaagctggttatagatggctatgagccagcatgtagtttctgagaactgaacc 560

                                                                       
Query: 361 tggatcctctctgcaagagcaacaagtgttcttaaccactgagccatgcccacagccctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggatcctctctgcaagagcaacaagtgttcttaaccactgagccatgcccacagccctg 620

                                                                       
Query: 421 aactgcagatagctttgctttgaaagcttggctgtgcttacagattcctttgaagtgtat 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aactgcagatagctttgctttgaaagcttggctatgcttacagattcctttgaagtgtat 680

                                                                       
Query: 481 catttttaagtttaataattttaatcaaaactatactttctagatgagtgtggctcgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catttttaagtttaataattttaatcaaaactatactttctagatgagtgtggctcgata 740

                                                                       
Query: 541 caaatacaaagtaatatttaaaaaattttagcagccaacttttttaaatgtaaaattaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaatacaaagtaatatttaaaaaattttagcagccaacttttttaaatgtaaaattaaa 800

                                                                      
Query: 601 tttaatgtatactttatttagctaaaagtattcccaaacaaagatgctatttagttcat 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttaatgtatactttatttagctaaaagtattcccaaacaaagatgctatttagttcat 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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