Query= MSMg01no489_a24.b1 MSMg01no489_a24.b1 CHROMAT_FILE:
MSMg01no489_a24.b1 PHD_FILE: MSMg01no489_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:09 2005
(560 letters)
>mm_chr2_137428121_137429079
Length = 959
Score = 1023 bits (529), Expect = 0.0
Identities = 551/559 (98%), Gaps = 3/559 (0%)
Strand = Plus / Minus
Query: 3 gaattcattaattgttcatataatttaaagttatattaacaatttttgtaagttgaattg 62
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattcattaattgtgaatataatttaaagttatattaacaatttttgtaagttgaattg 700
Query: 63 taaacaagataaagagttgatgtttatatggttctgtcgccagatatcagttcaaaaaaa 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 699 tagacaagataaagagttgatgtttatatggttctgtcgccagatatcagttc--aaaaa 642
Query: 123 aaagcaaagcattagcaacaaaaaacacttcctcttaaatctggccaagctatttgttaa 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 taagcaaagcattagcaacaaaaaacacttcctcttaaatctggccaagctatttgttaa 582
Query: 183 agctggttcacattaaatgtttgttaattcaatttataaaagtcaaagcgcaatggccac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agctggttcacattaaatgtttgttaattcaatttataaaagtcaaagcgcaatggccac 522
Query: 243 tgtctgctgcacacaaagagggctatatatgcacaggcgggcacacagccagcatgcagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtctgctgcacacaaagagggctatatatgcacaggcgggcacacagccagcatgcagt 462
Query: 303 ggcatatacactggtatcttgtatataaacattgtttgagtctctaataatcaaaaaaa- 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggcatatacactggtatcttgtatataaacattgtttgagtctctaataatcaaaaaaaa 402
Query: 362 tttttaaactctttatggttctaatatccttacaatgcaaaacaaatattgaatttcctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttttaaactctttatggttctaatatccttacaatgcaaaacaaatattgaatttcctg 342
Query: 422 tgttcagttcctgtgttcaggctgtgggccctcttgttggcaaccagctggatatgagtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgttcagttcctgtgttcaggctgtgggccctcttgttggcaaccagctggatatgagtg 282
Query: 482 gggtttgttttaacattttctgaaggtcaaagtttccacttgcactaggaacagagaaaa 541
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 281 gggtttgttttaacattttctgaaggtcaaagtttctacttgcactaggaacagagaaaa 222
Query: 542 agtttcctgtgaagtagaa 560
|||||||||||||||||||
Sbjct: 221 agtttcctgtgaagtagaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_a24.g1 MSMg01no489_a24.g1 CHROMAT_FILE:
MSMg01no489_a24.g1 PHD_FILE: MSMg01no489_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:09 2005
(562 letters)
>mm_chr2_137260581_137261542
Length = 962
Score = 1013 bits (524), Expect = 0.0
Identities = 558/582 (95%), Gaps = 20/582 (3%)
Strand = Plus / Plus
Query: 1 actaaatatttgaattgaggattttttttaactgaattatgctgtgactgagttcccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaatatttgaattgaggattttttttaactgaattatgctgtgactgagttcccttt 260
Query: 61 aggaaacgacttgttttctatgctgcctcactggccaattagtctttcataagaacaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaacgacttgttttctatgctgcctcactggccaattagtctttcataagaacaaag 320
Query: 121 cttcctacacttgggtttcctgtgtgagaatcaaatgaaggcttaataaattccctgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcctacacttgggtttcctgtgtgagaatcaaatgaaggcttaataaattccctgtct 380
Query: 181 cttgatctgccaattcatgtctagaattaattctgctttcaattttccatgtaactaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgatctgccaattcatgtctagaattaattctgctttcaattttccatgtaactaaag 440
Query: 241 tagacttgctaatgtcatctgcaacttgtccattcagatcagaagagaacctttgctcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagacttgctaatgtcatctgcaacttgtccattcagatcagaagagaacctttgctcta 500
Query: 301 acattgtccaggcttgtgactgtatggtgaacaacttacagcgtagaaatgctagctgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattgtccaggcttgtgactgtatggtgaacaacttacagcgtagaaatgctagctgaa 560
Query: 361 catcacacaggtactcttggtttttaaagaaaaagttcccaagtagtagaatataaggat 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 catcacacaggtactcttggtttttaaagaaaaagttcccaagtcgtagaatataaggat 620
Query: 421 gctcaaatctccagcctgtgcatcccctctgtgttcactgttctcatcaata-------- 472
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gctcaaatctccagcctgtgaatcccctctgtgttcactgttctcatcaatagttaacac 680
Query: 473 ------------tgaagcagtgtgcctttcaaagtatctggtccattacccatctccttt 520
|||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 681 ttaagcaccaaatgaagcagtgtgccgttcaaagtatctggtccattactcatctccttt 740
Query: 521 gcctgtttcagtcagtgcattaattgcagcaggatgtaggta 562
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctgtttcagtcagtgcattaattgcagcaggatgtaggta 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
