BAC Information

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BAC

Clone NameMSMg01-489D08
Chromosome2 (Build37)
Map Location 62,119,105 - 62,119,411
singlet/doubletsinglet
Overlap geneSlc4a10
Upstream geneTank, Psmd14, Tbr1, LOC100039274
Downstream geneDpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489D08.T7 (MSMg01no489_d08.b1)MSMg01-489D08.TJ (MSMg01no489_d08.g1)
ACCAG567746AG567747
length738742
length of high quality
(start - end)		611 (53 - 663)614 (81 - 694)
definitionCHROMAT_FILE: MSMg01no489_d08.b1 PHD_FILE: MSMg01no489_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:21 2005CHROMAT_FILE: MSMg01no489_d08.g1 PHD_FILE: MSMg01no489_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTATCTCTGTACCCCATTTTAAAATAGGGTTAT
TTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATAGT
ACCCCTCTATCAGATGTAGGATTAGTAAAGATCTTTTCCCAATCTGTTGG
TTGCTGTTTTTTCCTATTGACAGCATCCTTTGTCTAACAGCTTTGCAATT
TTACGAGGTCCCATTTGTCAATTCTTGATCCTAGAGCATAAGCCATTGGT
GTTTTGTTCAGGAAAATTTCCCCTGTGCCCATGAGTTCTAGGCTCTTTCC
CACTTTGTCTTCTATTAGATTCAGTGTATCTGGTCTTATGTGGAGGACTT
GAGCTTTCCTATAAAGAGATAAGAATAGGTTGATTTGCATTCTTCTACAT
GCTGACCTCCAGTTGAACTACCATCATTTGTTGAAAATGCTGTCTTTTAC
CACTGGATGGTTTTAGCTTCTTTGTCAAAGATCAAGTGACCATAGGTGTG
TGGGTTCGTTTCTGGGTCTTCAATTCTATTCGATTGATCTACTTGCCTGT
TTCTGTACCAATACCATGCAGTTTTTAACACTATTGCTGTATAGAACAGC
TTGAGGTCAGGGATGGTGATTCACCTAGAAATTTTTTTTATTGTTGAGAA
TAGTTTTTGCTATTCTAGGTTTTTTGTATTCCCAATGA

TAAATTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCATAATCCTTTTACCTT
GTCTGTTGAGAAGCATTTTCCTATACAAAAACATTGCAAATGGCTCCAAG
ATTACCCACATGGGCCACATAACTGTAAAGTGCACTAGACTGCTGCTTTG
GTTATGTTAAAAGTGCTACAGAACATGATCATCGCTACGATAACTTCTAT
AGGAAAGTACCTCTCTGCCCAGGAAACACTCTTGCCTCTGTTTCCAACTA
CAGGAACTTGCTTTGCTCATTACCCTGACGCTTCCATTCCTCATTGAGTT
ATATAGTCTATTGCTACAAGAAATCCTGCTCGGGATGCTGGCGTGGATGT
GGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAATGCAGGCTTGTACA
ACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTAC
TACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCC
CCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATT
TATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAAT
GGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATT
AAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_d08.g1 MSMg01no489_d08.g1 CHROMAT_FILE:
MSMg01no489_d08.g1 PHD_FILE: MSMg01no489_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:21 2005
         (614 letters)



>mm_chr2_62118909_62119922
          Length = 1014

 Score =  540 bits (279), Expect = e-157
 Identities = 300/307 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcataatccttttaccttgtctgttgagaagcattttcctatacaaaaacattgcaaa 60
           |||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 actcataatccttttgtcttgtctgttgagaagcattttcctatacaaatacattgcaaa 444

                                                                       
Query: 61  tggctccaagattacccacatgggccacataactgtaaagtgcactagactgctgctttg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggctccaagatcacccacatgggccacataactgtaaagtgcactagactgctgctttg 384

                                                                       
Query: 121 gttatgttaaaagtgctacagaacatgatcatcgctacgataacttctataggaaagtac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttatgttaacagtgctacagaacatgatcatcgctacgataacttctataggaaagtac 324

                                                                       
Query: 181 ctctctgcccaggaaacactcttgcctctgtttccaactacaggaacttgctttgctcat 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 323 ctctctgcccaggaaacactcttgcctctgtttcctactacaggaacttgctttgctcac 264

                                                                       
Query: 241 taccctgacgcttccattcctcattgagttatatagtctattgctacaagaaatcctgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taccctgacgcttccattcctcattgagttatatagtctattgctacaagaaatcctgct 204

                  
Query: 301 cgggatg 307
           |||||||
Sbjct: 203 cgggatg 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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