BAC Information

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BAC

Clone NameMSMg01-489D21
Chromosome2 (Build37)
Map Location 17,612,610 - 17,613,193
singlet/doubletsinglet
Overlap geneNebl
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneLOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489D21.T7 (MSMg01no489_d21.b1)MSMg01-489D21.TJ (MSMg01no489_d21.g1)
ACCAG567771AG567772
length1,476765
length of high quality
(start - end)
---585 (74 - 658)
definitionCHROMAT_FILE: MSMg01no489_d21.b1 PHD_FILE: MSMg01no489_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:24 2005CHROMAT_FILE: MSMg01no489_d21.g1 PHD_FILE: MSMg01no489_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTACGAAACTAAATACAATCCTATTCTACACATGTCTTTTATCGCCTTT
TTTGCNCGCTGTGCGTACGCGTGCTTATTGAACGNACGGATATTACCACT
ATCGTTCGCCGCCTAGGGTCAGCGTGTCGTTCTGTAGCAGCCACGCCGGC
GAAACGAAAAGACAGGAAGAGCGACTGGGCGAGGTGTGAAGGGGTGTGGC
GGGCTTTAACTTAGTGTCCTCTGCGCCGGCGCTCACAGTGCGCCCTGAAC
GCGTGCGCGAAACCTTAATCAATACGCTATCAAGGTGCATAGAGGATGGC
ATTCAGAGGATTATACACCGCAAGAACCAACATGAGTACCATCGCACCAC
GGTGGTGTCTCGTCGGCATGGCCCGTCGCGGATATACAGGCGGCGAATAT
AGAGAAAACAAGATATACAAACAAGAATCGAACCGCGCCTCTCTCATCAC
ACCTAAGGTCACCGCAGAATATACAACTAGGCGAGTAGTGTATGTTGTAA
ATAAGCCGGCAGTGATTCTGACGCCAGGCAGTATTTTGTTATTCTATGCC
GGCTCAAGACACACGTATGTCTCATAGCTCCATGAATCTTCTGTTTATTT
CATATGCTATAGTGTGAGAAGAATGAAAGCCTGCGCAGAGCTATGCAGGA
GCGAGTTTGGTNTAGTCACGCTACCGGCGGATACGTGTTATGGTTACGCC
AACGATGCGCTGATATTGGCGTGTACCGCACGCGATGATNTTAACAATAA
ACATACTATAGATGCATCTCTGCGCACGACATATGNAACTGTACGTCGGG
CGCGTTGTATGTATNATGAGCGGTGTCGTATAGGAATCGCTAGAGCCTAT
AGACGATAGTCGGTGNTACGACTTTTACCGTCCGCCGGCACATGAGAGAC
TACTGTCTCGCTCGCTTAGGAAGTCGCGCGCGCGCGGTATTATGTCAATA
TCCGATATAGTCAGACCGTGAGGAGGTGTCTAATAGCTCTAGCGACTCGA
CGCGAGAATGAATGGTGTTCTCTGACTCACGAGAGCTACTAGAGAATAGT
AGTATATGATGACAAATCTACATTAACGCGCATAGAGTATATTGCGAACG
AGTGATGAATGGCGTTGTATAGCCGCACATAGTATAGACACGATACTACT
TACACCACCACCATCGACACAGTAATAGCGAGATGGCGGAGGCGAAGATG
TGATGGTATATCAATCTCGCAACATATGCGCGGCGCACGTATTATATCAT
GAACAGCCACCGCTTCTGAATTATATATTGCATCTCCCGACCGAGTCTGC
TCACAGTCTTTTCGCTCACACCTTGTCCATCTTGTTGTTGTGTGTTCCGC
GCGTGATCACGGCCCGTATAATATATTACACTCCGCCGACGCTCCGCGAT
CTATGACCGGCGGCGCGCCATATATATTATAGTCAGCGTGTTCGACGCGA
GCGAACAATTAGTCGATATATATAAG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAATCCTGTAAAGGGTCTCTGTCAT
TACTGCTGAACGGTCTGAAAGTATCAGCATTACAAAGAGCTCACCCAGTA
GAACATTTCTTGGTTAGATTTAAGTGTGTGTGTATATGTGATGTGGGAAG
TTTGGTACCTGAGTTCTGTCTTAGGTAGGTATCCCTGACTGTGGAGAACA
AAAGAGAAGAGATCATTTCTTTGTGCCCGTGGCGTCTGCTACATTCCAGC
GGACTTTGTGTAAGTAGTGTGGTTTGTTTTGACCCCCAAAGTGGTCTATA
TATGTGTAGGAAAAGGAGCCTTATGATGTGAGGCGGAGCAGCCATGGTGG
CTAAACCATGTGACTTTAATGGTAAAGGCTACAACCCTTGGAGGCCGTGC
TGAGAATCAGCTGAATGTGTTGAGCCCAAATTCAGATCTGGAGGACGCCT
GTTATAAGCAGGTGTTCTGATGGAGCAGAGGAGAGCCAAGGGATGGGCGC
TGACTTTTATTGTTTAGTTCTTTAAGAAGACAATACTGTCTTGAAGCTAT
GTTTGAAAGAACAGTGATTTGTGTACTTGTCAATGGTTCCCATCAGCACC
ATGTGGCCCCGGATTAGGGAGCACTAAGGCTCCATATTTGAGGAAACCAC
CTGGGAGAATCAGAGATGTTGTCATAGTAACCATACCATCCATCCNAGCT
CTGTGCTGCTATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_d21.g1 MSMg01no489_d21.g1 CHROMAT_FILE:
MSMg01no489_d21.g1 PHD_FILE: MSMg01no489_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:24 2005
         (585 letters)



>mm_chr2_17612410_17613394
          Length = 985

 Score = 1060 bits (548), Expect = 0.0
 Identities = 575/584 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaatcctgtaaagggtctctgtcattactgctgaacggtctgaaagtatcagcattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tctaatcctgtaaagggtctctgtcattactgctgaacggtctgaaagtatcagcattac 725

                                                                       
Query: 61  aaagagctcacccagtagaacatttcttggttagatttaagtgtgtgtgtatatgtgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaagagctcacccagtagaacatttcttggttagatttaagtgtgtgtgtatatgtgatg 665

                                                                       
Query: 121 tgggaagtttggtacctgagttctgtcttaggtaggtatccctgactgtggagaacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgggaagtttggtacctgagttctgtcttaggtaggtatccctgactgtggagaacaaaa 605

                                                                       
Query: 181 gagaagagatcatttctttgtgcccgtggcgtctgctacattccagcggactttgtgtaa 240
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 604 gagaagagaacatttctttgtgcccgtggcgtccgctacattccagcggactttgtgtaa 545

                                                                       
Query: 241 gtagtgtggtttgttttgacccccaaagtggtctatatatgtgtaggaaaaggagcctta 300
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtagtgtggcaagttttgacccccaaagtggtctatatatgtgtaggaaaaggagcctta 485

                                                                       
Query: 301 tgatgtgaggcggagcagccatggtggctaaaccatgtgactttaatggtaaaggctaca 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 484 tgatgtgaggcggagcagccatggtggctaaaccatgggactttaatggtaaaggctaca 425

                                                                       
Query: 361 acccttggaggccgtgctgagaatcagctgaatgtgttgagcccaaattcagatctggag 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acccttggaggctgtgctgagaatcagctgaatgtgttgagcccaaattcagatctggag 365

                                                                       
Query: 421 gacgcctgttataagcaggtgttctgatggagcagaggagagccaagggatgggcgctga 480
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gacgcccgttttaagcaggtgttctgatggagcagaggagagccaagggatgggcgctga 305

                                                                       
Query: 481 cttttattgtttagttctttaagaagacaatactgtcttgaagctatgtttgaaagaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cttttattgtttagttctttaagaagacaatactgtcttgaagctatgtttgaaagaaca 245

                                                       
Query: 541 gtgatttgtgtacttgtcaatggttcccatcagcaccatgtggc 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtgatttgtgtacttgtcaatggttcccatcagcaccatgtggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)