BAC Information

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BAC

Clone NameMSMg01-489D24
Chromosome2 (Build37)
Map Location 76,900,081 - 76,972,943
singlet/doubletdoublet
Overlap gene2610301F02Rik
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
Downstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993, LOC667920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489D24.T7 (MSMg01no489_d24.b1)MSMg01-489D24.TJ (MSMg01no489_d24.g1)
ACCAG567777AG567778
length777725
length of high quality
(start - end)
617 (49 - 665)302 (78 - 379)
definitionCHROMAT_FILE: MSMg01no489_d24.b1 PHD_FILE: MSMg01no489_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:25 2005CHROMAT_FILE: MSMg01no489_d24.g1 PHD_FILE: MSMg01no489_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,900,081 - 76,900,693)(76,972,642 - 76,972,943)
sequence
NNAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTGGTTGTTTTCTCTAGATAAAAGCTATGCCTGCATGTAGTCTGG
AAAATGGCCACTAGAGGGATGTAATACCTTGTTCAAATTGCATGTCTTGA
AAGTCCTTCCAGCACAGAGAACACAAAATAAGAAAACAAAACCCAAAACC
AAGCATTTCTTCAGTAAAAATATCACCTTCGCAAAACCATAATTTTAATT
TTGACAAATCAATGCCAATAAAATAGGATCTGTTTGTTTCTGATTTTGTT
TTTCAATCACCTAGGAGATTTATTTGTTTCTTATCAGGCACTTTATCTAT
TGTGCTGTAAATTCCTTAAGGGTAAGGACTGGTGCCCGACTTACTCCTAT
AATCCTTGTAGCCTTGAGCACATGGTCTTATAATAACGGAAGGTTAATAC
ATTTTTTTAAAAGTTTGAGACAGAGTCTCAGCTCTCCGAGCCTGACCTCA
ATCTTTCCATGTAGCCTGGGGACCTTGAACTCTTAATCCTTCTCTGTCTA
TCTCCTGGGTTCTGGGATTACCGGCACACACTACCACTGATGGTTTATGG
ATGCTGGAGAGTATACTTTCTAGGCAAGCACTCTACCAACTGAACTACAT
CTCTAGACCAATTAATGTCATTTTTAAGATCAATAAAATAGAATCTGATN
CACATTTAAGGAAAAAAAAGACACATAAACTTAAGGAGTGAGAAAAATAC
GTGTTGAGTAGCCATATAAAAATGTCA
NACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAATGAATTTTAAAATAGAAAG
GTGGAGATATCAGGGCAATTTCATGTAGTATTATGTGCTGAGGAAAAAAG
ATCTTTATGCTATTTTCTAAATTGAACGAACACACCAATCAAATTATCTC
ACCAGTTACTAACGTAGCAGTAGACTTCCTGTCTGTTGTGATTCCTCAGG
AAGTAGATCATCACGCTGTGTGGATGTGAGATGTTCCTTTGCAATGTGTC
TGTGGTGTTTCCCAGAAGCTTCGCTGCATCCTTTACTCCATTTTTCTCAG
CCTTCTTGCATCCAATTCTAACCTGTCCTGGGTATCTCTAGCTCTTGGAT
TTTCCCTGCAGTCTCTCCCATTTTCCCAAANAAAGCTTTCTGAAGTTCTT
TACCCCAATCCAATTTCAACTCTTTTAAAAAAGAGACCCCCCCCCCTTTA
TTTTTCCCCCCCAGGGGGGGGGGCGCCGCGCAAAGGNCCCTTCCCTCCCA
NNATGGGGGNAGCGAAAAAAAAGAAAGAGGGATTTTTTTTTTTTTGCGCG
GGGAAGCCAAAAAAAATATAAACNNNNNNNCTTCGTATTATTCCCGCCCG
NNTNCGCCGTTTTTCTTTATATTANATAATCGCGNTCCCCGCCTGTGTTC
TTTTGGCCGGACTACTTATTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_d24.b1 MSMg01no489_d24.b1 CHROMAT_FILE:
MSMg01no489_d24.b1 PHD_FILE: MSMg01no489_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:25 2005
         (617 letters)



>mm_chr2_76899876_76900892
          Length = 1017

 Score = 1100 bits (569), Expect = 0.0
 Identities = 602/613 (98%), Gaps = 1/613 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattggttgttttctctagataaaagctatgcctgcatgtagtctggaaaatggccacta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattggttgttttctctagataaaagctatgcctgcatgtagtctggaaaatggccacta 265

                                                                       
Query: 66  gagggatgtaataccttgttcaaattgcatgtcttgaaagtccttccagcacagagaaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagggatgtaataccttgttcaaattgcatgtcttgaaagtccttccagcacagagaaca 325

                                                                       
Query: 126 caaaataagaaaacaaaacccaaaaccaagcatttcttcagtaaaaatatcaccttcgca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caaaataagaaaacaaaacccaaaaccaagcatttcttcagtaaaaatatcaccttcgca 385

                                                                       
Query: 186 aaaccataattttaattttgacaaatcaatgccaataaaataggatctgtttgtttctga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaccataattttaattttgacaaatcaatgccaataaaataggatctgtttgtttctga 445

                                                                       
Query: 246 ttttgtttttcaatcacctaggagatttatttgtttcttatcaggcactttatctattgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttgtttttcaatcacctaggagatttatttgtttcttatcaggcactttatctattgt 505

                                                                       
Query: 306 gctgtaaattccttaagggtaaggactggtgcccgacttactcctataatccttgtagcc 365
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gctataaattctttaagggtaaggactggtgcccgacttactcctataatccttgtagcc 565

                                                                       
Query: 366 ttgagcacatggtcttataataacggaaggttaatacatttttttaaaagtttgagacag 425
           ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 566 ttgagcacatggtcttataataacggaaggttaatacatttcttaaaaagttcgagacag 625

                                                                       
Query: 426 agtctcagctctccgagcctgacctcaatctttccatgtagcctggggaccttgaactct 485
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtctcagctctcagagcctgacctcaatctttccatgtagcctggggaccttgaactct 685

                                                                       
Query: 486 taatccttctctgtctatctcctgggttctgggattaccggcacacactaccactgatgg 545
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 686 taatccttctctgtctatctcctgagttctgggattaccggcacacactgccactgatgg 745

                                                                       
Query: 546 tttat-ggatgctggagagtatactttctaggcaagcactctaccaactgaactacatct 604
           ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 746 tttatagggtgctggagagtatactttctaggcaagcactctaccacctgaactacatct 805

                        
Query: 605 ctagaccaattaa 617
           |||||||||||||
Sbjct: 806 ctagaccaattaa 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no489_d24.g1 MSMg01no489_d24.g1 CHROMAT_FILE:
MSMg01no489_d24.g1 PHD_FILE: MSMg01no489_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:25 2005
         (302 letters)



>mm_chr2_76972442_76973143
          Length = 702

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatgaattttaaaatagaaaggtggagatatcagggcaatttcatgtagtattatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ataatgaattttaaaatagaaaggtggagatatcagggcaatttcatgtagtattatgtg 443

                                                                       
Query: 61  ctgaggaaaaaagatctttatgctattttctaaattgaacgaacacaccaatcaaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgaggaaaaaagatctttatgctattttctaaattgaacgaacacaccaatcaaattat 383

                                                                       
Query: 121 ctcaccagttactaacgtagcagtagacttcctgtctgttgtgattcctcaggaagtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcaccagttactaacgtagcagtagacttcctgtctgttgtgattcctcaggaagtaga 323

                                                                       
Query: 181 tcatcacgctgtgtggatgtgagatgttcctttgcaatgtgtctgtggtgtttcccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatcacgctgtgtggatgtgagatgttcctttgcaatgtgtctgtggtgtttcccagaa 263

                                                                       
Query: 241 gcttcgctgcatcctttactccatttttctcagccttcttgcatccaattctaacctgtc 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 gcttcgctgcatcctttactccatctttctcagccttcttgcatccaattctaacctgtc 203

             
Query: 301 ct 302
           ||
Sbjct: 202 ct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)