Query= MSMg01no489_i21.b1 MSMg01no489_i21.b1 CHROMAT_FILE:
MSMg01no489_i21.b1 PHD_FILE: MSMg01no489_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:49 2005
(595 letters)
>mm_chr2_16375555_16376549
Length = 995
Score = 1046 bits (541), Expect = 0.0
Identities = 577/589 (97%), Gaps = 2/589 (0%)
Strand = Plus / Plus
Query: 8 ttcagtgagatg-accctttggtctgcatcttttttgttttgtttttatttgcttatgat 66
|||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 208 ttcagtgagaggta-cctttggtctgcatcttttttgttttctttttatttgcttatgat 266
Query: 67 gttggtaaatgacacttatctccctatctttgaaaataaagtctatatgagcacttcctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttggtaaatgacacttatctccctatctttgaaaataaagtctatatgagcacttcctc 326
Query: 127 attgacttttatgtcaaattctatttgaattagcaagccagcaactttctcaggcacccc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 attgacttttatgtcaaattctatttgaattagcaagccagcaactttctcaggcacact 386
Query: 187 ttcgtcccttctaagatgggggaaaacaggccagcacagagttagtttcatctgatccct 246
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 ttcgtcccttctaagattggggaaaacaggccatcacagagttagtttcatctgatccct 446
Query: 247 tttagtagtgaggagtctgaaaatacattcatggaaaatgagaagttcaaggttgctata 306
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 tttagtagtgaggagtctgaaaatacattcgtggaaaatgagaagttcaaggttgctata 506
Query: 307 gcctaactcatagtcggtagtgaaggtctttaaatctgggataagaagccagggcggatt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcctaactcatagtcggtagtgaaggtctttaaatctgggataagaagccagggcggatt 566
Query: 367 tattctgggcactgaacgctattttatgacttcagctttgcgtactgagatagaaatgaa 426
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 567 tattctgggcactgaacgctattttatgacttcagctttgcttactgagatagaaatgaa 626
Query: 427 tgttggagtgtgattaggcttttacaaatattaactctcatcatgcagataatcaatatc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgttggagtgtgattaggcttttacaaatattaactctcatcatgcagataatcaatatc 686
Query: 487 catcacgaaatgtagaagaaagtgggtatgagcaaaagaattaaagagcatccatactgg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 catcacgaaatgtagaagaaagtgggtatgagcaaaagaattaaagagcatccatactgg 746
Query: 547 gctggacagatggctcagcagtgaacagcactgactgctcttccagagg 595
||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 747 gctggacagatagctcaccagtgaacagcactgactgctcttccagagg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_i21.g1 MSMg01no489_i21.g1 CHROMAT_FILE:
MSMg01no489_i21.g1 PHD_FILE: MSMg01no489_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:50 2005
(672 letters)
>mm_chr2_16535882_16536956
Length = 1075
Score = 1100 bits (569), Expect = 0.0
Identities = 648/675 (96%), Gaps = 3/675 (0%)
Strand = Plus / Minus
Query: 1 atatgttggagggaaataaactttccaagaccctgatctgtaggtctcgcaagcattatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 875 atatgttggagggaaataaactttccaagaccctgatctgtaggtctctcaagcattatt 816
Query: 61 ctctagagatgttattgttctccattcctttctcaacgattttattaaaattaaaccaga 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 815 ctctagagatgttattgttctccattcctttctcaatgattttattaaaattaaaccaga 756
Query: 121 atatatgattagccactgaagtgaggctataaggaacgttcttcaaaaaagtgattcatg 180
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 755 atatatgattagccactgaagtgaggctataaggaatgttcttcaaaacagtgattcatt 696
Query: 181 tctccttcaatttaccgtccttttgaccagaacagtatttactaatgatggataaaatag 240
||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 695 tctccttcaatttactatccttttgaccagaacagcatttactaacgatggataaaatag 636
Query: 241 gtatttgtcaaagtgaggcaggttaatagaactatagcacaagacactgactggatgcta 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtatgtggcaaagtgaggcaggttaatagaactatagcacaagacactgactggatgcta 576
Query: 301 aagctgcatctgcctgtgtaaaagacagaaccagagaaaagaggcctgccaagcaggaca 360
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 575 aagctgcatctgcctgtgtaaaagacacaaccagagaaaagaggcctgtcaagcaggaca 516
Query: 361 aagatctttcagtgcctcccagggaaagtaaatcaattcttagatgtgtcgttttttg-- 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 515 aagatctttcagtgcctcccagggaaagtgaatcaattcttagatgtgtcgtttttttat 456
Query: 419 tttttgtttttttaa-catcttctgactgacatctaccaaaaaggataagaggaagccct 477
||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 tttttttttttttaaacatcttctaactgacatctaccaaaaaggataagaggaagccct 396
Query: 478 gccattttccttacttgaaagaagacatttcccaaattggagtgtagaaaggcataggaa 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 gccattttccttacttgaaagaagacatttcccaaaatggagtgtagaaaggcataggaa 336
Query: 538 cttccttgtaattgatcatttaatttccaaatgtattacttatctaaaagaaatgcatgg 597
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 335 cttccttgtaattgatcatttaatttccgaatgtattacttatctaaaagaaatgcatgg 276
Query: 598 gcacaggacgcatgtgttttttcacaaatacttcacaccaatcagaactttaagtgtgag 657
| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275 gaacaggacccatgtcttttttcacaaatacttcataccaatcagaactttaagtgtgag 216
Query: 658 gtatatttttccttc 672
|||||||||| ||||
Sbjct: 215 gtatattttttcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1075
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1065
Effective search space: 705030
Effective search space used: 705030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
