BAC Information

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BAC

Clone NameMSMg01-490I23
Chromosome2 (Build37)
Map Location 164,857,575 - 164,858,185
singlet/doubletsinglet
Overlap geneNcoa5
Upstream geneLOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5
Downstream geneCd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490I23.T7 (MSMg01no490_i23.b1)MSMg01-490I23.TJ (MSMg01no490_i23.g1)
ACCAG568766AG568767
length749762
length of high quality
(start - end)
196 (129 - 324)637 (81 - 717)
definitionCHROMAT_FILE: MSMg01no490_i23.b1 PHD_FILE: MSMg01no490_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:11 2005CHROMAT_FILE: MSMg01no490_i23.g1 PHD_FILE: MSMg01no490_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNGACTAGGC
GGNAANCATGACCTATTACAAAAAGAAGTCTGACTCAGAGACCCACCTGT
CTGCCTCCTGAGTGCTGGGGTTTTACACGTGTGGCCCTCCAAACCTGCTG
CAAGTTTTTTTTTCTTTCCTTTTCTTTTCTTCTCTTTTCTTTTCTTTTCT
GTTTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTAAAGCTCT
GGCTGTTCTGGAACTCATTCTGTAGACCAGGCTGGCCTCAAACTCAGCCT
GCCTCTGCCTCCCGAGTGCTGTTATAAATTTGNGNGCTACCACGCCCAGC
ACTTTTTTCTTTTCTTTCCTTTTCTTTCCTTTCCTTTTCTTTTCTTTTCT
TTTCTTTTCTTTTCTTTTCCACCCTTTTCTTTTCAGATTTATTTACTATA
TGTAAGTACACTGCAGCTGTCTTCAGACACAGAAGAGGGCATCAGATCTC
ATTACGGATAGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAAATCAGG
ACCTTCATAAGAGAAGTCAGTGCTTTTAACTGCTGAGCCATCTCTCCAGC
CCCATTTTATTTTCTAAACTCAGGTACTGAGGAACGAACCCAGGACCTCA
TGTATACTTTACTCTACCACTGAGCCAGCTTCAACCGCAGACATACTAAC
CCTAACACTTAAGCATTTATCATATGCCAGGGACTGTCTAAAAATTCTA
NAAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCCAAAATTCAGCTGTGCATTTAAGAATGGAA
AACCTTTTACAAAAAGGAAACCTTTGGAATGTGCCCTTCAGTTTTCTTCA
GGTTTTGACTCCCCACGTGACAAATGTTGTCTCTGTTTCTGAACTCACCA
TTGGTGCTTAGTTGCAAAGGGAATCCTCAGCTAGCAGTGCACATGGTAAA
TACCACTCTTTTGTTCTCTAAGTTGGTTTGTAAGATGGGTGCATTGGTGG
TGTTATATGTGTTACAAAGTTTTGTTCTTATACAGAAATGAGAGCTCAGT
AAAATTTAAAATTTCTTGTCCAAGAACATGTTCAAGATATTGTTGGAGAT
GAAAGATTTCAAAAGAAAAAGCACCTATGTTGTATAGTATCCACAGTCCA
GGAGTTCTGAGGCTTCTTTGTATGCTAACCTCATGCAAGTATGTCGCAGA
GATGACAGCAATCTCATTATGACTTTCCCTTTGTCTTCCCATGAACTCTT
CCAGTTCAATGTTCCCCCAAAGAAGAATTCTTTCTACTCTATTGCTTCCT
GTGTTTTATGAATGATTAGTCTTTGAGGCTAATACTTTTAAAGCTCTCTT
TAAAAGTATTTTTAACAAATGTTTTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTTAAAAGATTTGTTCTATGAACAGCATATACTGTTGGCTAGACT
ATTTCTGCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_i23.g1 MSMg01no490_i23.g1 CHROMAT_FILE:
MSMg01no490_i23.g1 PHD_FILE: MSMg01no490_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:11 2005
         (637 letters)



>mm_chr2_164857392_164858428
          Length = 1037

 Score = 1104 bits (571), Expect = 0.0
 Identities = 601/611 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgcatttaagaatggaaaaccttttacaaaaaggaaacctttggaatgtgcccttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctgtgcatttaagaatggaaaaccttttacaaaaaggaaacctttggaatgtgcccttca 735

                                                                       
Query: 61  gttttcttcaggttttgactccccacgtgacaaatgttgtctctgtttctgaactcacca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 734 gttttcttcaggttttgactccccacgtgacaaatgttgtctctgtttctaaactcacca 675

                                                                       
Query: 121 ttggtgcttagttgcaaagggaatcctcagctagcagtgcacatggtaaataccactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 674 ttggtgcttagttgcaaagggaatcctcagctagcagtgcacatggtaaatactactctt 615

                                                                       
Query: 181 ttgttctctaagttggtttgtaagatgggtgcattggtggtgttatatgtgttacaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttgttctctaagttggtttgtaagatgggtgcattggtggtgttatatgtgttacaaagt 555

                                                                       
Query: 241 tttgttcttatacagaaatgagagctcagtaaaatttaaaatttcttgtccaagaacatg 300
           ||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct: 554 tttgtgcatatacagaaatgagagctcagtaaaattgaaaatttcttgcccaagaacacg 495

                                                                       
Query: 301 ttcaagatattgttggagatgaaagatttcaaaagaaaaagcacctatgttgtatagtat 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 494 ttcaagatattgttggagatgaaagatttcaaaagaaaaagtagctatgttgtatagtat 435

                                                                       
Query: 361 ccacagtccaggagttctgaggcttctttgtatgctaacctcatgcaagtatgtcgcaga 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccacagtacaggagttctgaggcttctttgtatgctaacctcatgcaagtatgtcgcaga 375

                                                                       
Query: 421 gatgacagcaatctcattatgactttccctttgtcttcccatgaactcttccagttcaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gatgacagcaatctcattatgactttccctttgtcttcccatgaactcttccagttcaat 315

                                                                       
Query: 481 gttcccccaaagaagaattctttctactctattgcttcctgtgttttatgaatgattagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gttcccccaaagaagaattctttctactctattgcttcctgtgttttatgaatgattagt 255

                                                                       
Query: 541 ctttgaggctaatacttttaaagctctctttaaaagtatttttaacaaatgttttgtgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctttgaggctaatacttttaaagctctctttaaaagtatttttaacaaatgttttgtgtg 195

                      
Query: 601 tgtgtgtgtgt 611
           |||||||||||
Sbjct: 194 tgtgtgtgtgt 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)