BAC Information

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BAC

Clone NameMSMg01-490J24
Chromosome2 (Build37)
Map Location 126,885,999 - 126,886,378
singlet/doubletsinglet
Overlap geneAp4e1
Upstream geneFgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik
Downstream geneBlvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490J24.T7 (MSMg01no490_j24.b1)MSMg01-490J24.TJ (MSMg01no490_j24.g1)
ACCAG568816AG568817
length753865
length of high quality
(start - end)
381 (330 - 710)---
definitionCHROMAT_FILE: MSMg01no490_j24.b1 PHD_FILE: MSMg01no490_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:16 2005CHROMAT_FILE: MSMg01no490_j24.g1 PHD_FILE: MSMg01no490_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACCATAATTTGCGGCCGCTAAACGAAGACTATAGTTCCAGAACCGGC
GGAANNCNGNAGCAGTACCTGAAAAACCGATTTGCCACCACTGATGTTAC
TAAAGAACAGTCGGGAGACTATGCAAACAAAGCACACAGATAAGCTACTA
TTACTGACAACCTTCAATCAAGCCTCTTGCCCTCAGAGAACTCGCCCATC
CACCCTGATCATTCTTGTTCATTTATGTGGGTCCTGTGCCTTCCACTGGC
AGAATGGACTTTAGAGAAAAAACTTACTTACAGGACATGTCCCCTTGGTA
GTACATTACCATGTTAGTAACTTTTTCTACAGCTGGAAGATGCTGCTGTG
AGAGCTAGAGGAGGCATTTCCCACCATGCACAGATGAACTCCAGTTCTTG
GTACCAACAGATGGGACAGGCATTCTTTCAGGAATGTAATAGGTAACTTA
CCAAATCGACTGTATTTTCTGGTCCTAGCCCAACAAACAGCGATGATGCC
AACAGCTGCTTTTCTTTCTCCTCTGTAGAAGGGATATGGCCTTGAGCTTG
GTCCTTTCTGGTCTTGGCTTGGTCTACATTCTCCACTGTTGCACCCTCTG
CAGGAACATGTGAGGCTTCCGGTTTATCACCAGTTCCACTCTCCTTCTTG
GGCAGATAGCCCTCTTTACCCCATAATTTCTTTATCCCTTCCATCTTCAA
CTGCTTGTTCTAAGGAGATTAAGATAAGCAGCCTAGCTTATATGATGCTG
AAT
NAACTATGCTGTGGGTGGCCTGGNGGCCGCCCCGGCTTCGTCACCCGCCN
GACACTATAGAAGGATTGCAGGCCACCCGCGACAGCCAAGGANACACAGA
GAAACCCTGTCTCAAGAAAGAATTTTCCCCCCGGAGGGAGGGAGGGAGGG
AGGGAGGNGAGGTTTTTTTTTTTTTGCGGCGGGGGGGGTTCGTTCCTGGT
GTGCCCTCTTTCCCCTTCCTCCCCCCCCTCTTCCGCTCCCCTCCCTCCCC
CCTCCCCCCCCCCCTCTTCTTTCTCTGNGNCCCCCCCCNCCCCCGCCCCC
CCGCCGCGGGGCGGCCCCCCNCCGCCCCGCCCCCCCNCCCCTTTTTGGTG
GCTTTCCNGGCCNGCGAGGCCCGCCGCCCGCGGGGGTTTTTTCCCCCCCC
CCCCCCGGGCGGGGGTGGCTTTTCCCCCGTGCCTCCNCTCTCCTTTTTCC
CCCCCCCCCCCTTTTTTTTTTTGGCTGCGTGCTCCCTCCCCCCCCCCTTC
CCCCCCCCCTCTTCCCCCCCCCCCCCCCTCTCCCGCCCTTCCCTCCCCCC
CCCCCCCCCCTCCTTCCCCTTCTCCCTCCCCCTCCTCCCCCCTCCCCCCC
CTTCCCCCCCTCCCTTCCCTCCCCCTCCTCCTTCTTCCCCCCCCCCCCTC
TCTCCCTCCCCGCCTCTTTCCCCCCGCTCCCCCCCGCCCTTTCCCCTCCC
CTTCCCCCTCCTCCCCCCCCCCGTTTCCCCCCCTCCCTCTTTTTTTTTTC
CTTCCTCCTCCGCCCCCCCCCCTCCCCTCCCCCTCTCTTTTTTCTGCCCC
ACGTCCGCCCCCCGCCCCCCTGTCCTCTCCTCCCTCTTCCCCCTCCCCCC
TCCTCTCTCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_j24.b1 MSMg01no490_j24.b1 CHROMAT_FILE:
MSMg01no490_j24.b1 PHD_FILE: MSMg01no490_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:16 2005
         (381 letters)



>mm_chr2_126885799_126886580
          Length = 782

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctggaagatgctgctgtgagagctagaggaggcatttcccaccatgcacagatgaac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagctagaagatgctgctgtgagagctagaggaggcatttcccaccatgcacagatgaac 521

                                                                       
Query: 61  tccagttcttggtaccaacagatgggacaggcattctttcaggaatgtaataggtaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tccagttcttggtaccaacagatgggacaggcattctttcaggaatgtaataggtaactt 461

                                                                       
Query: 121 accaaatcgactgtattttctggtcctagcccaacaaacagcgatgatgccaacagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 accaaatcgactgtattttctggtcctagcccaacaaacagcgatgatgccaacagctgc 401

                                                                       
Query: 181 ttttctttctcctctgtagaagggatatggccttgagcttggtcctttctggtcttggct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 400 ttttctttctcctctgtagaagggatatggccttgagcttggtcctttctggtcgtggct 341

                                                                       
Query: 241 tggtctacattctccactgttgcaccctctgcaggaacatgtgaggcttccggtttatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tggtctacattctccactgttgcaccctctgcaggaacatgtgaggcttccggtttatca 281

                                                                       
Query: 301 ccagttccactctccttcttgggcagatagccctctttaccccataatttctttatccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccagttccactctccttcttgggcagatagccctctttaccccataatttctttatccct 221

                               
Query: 361 tccatcttc-aactgcttgt 379
           ||||||||| ||||||||||
Sbjct: 220 tccatcttcaaactgcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space:   287556
Effective search space used:   287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)