Query= MSMg01no490_m15.b1 MSMg01no490_m15.b1 CHROMAT_FILE:
MSMg01no490_m15.b1 PHD_FILE: MSMg01no490_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:29 2005
(575 letters)
>mm_chr2_143026486_143027462
Length = 977
Score = 1065 bits (551), Expect = 0.0
Identities = 570/577 (98%), Gaps = 2/577 (0%)
Strand = Plus / Plus
Query: 1 gggaagagtcttgagccttttgtgtcaatgcattagaaaacaaaatcttacgtctacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gggaagagtcttgagccttttgtgtcaatgcattagaaaacaaaatcttacatctacaga 260
Query: 61 acactaaggctgtgttcttgtcttctggtaataacagagattataaatgttacttttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactaaggctgtgttcttgtcttctggtaataacagagattataaatgttacttttcta 320
Query: 121 taccagaggctttgccttcgattagttatatgattctggtcgaattatgggatctcattg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 taccagaggctttgccttcgattagttatatgattctggccgaattatgggatctcattg 380
Query: 181 gatctgtgcccacatccatgtgatgaactgctaagtctctggtctctcagagtctttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctgtgcccacatccatgtgatgaactgctaagtctctggtctctcagagtctttaca 440
Query: 241 atgattctgtatagagtatgtacagaaaaacctct--gagtcttattacagagccacaag 298
|||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 atgagtctgcatagagtatgtacagaaaaacctctcagagtcttattacagagccacaag 500
Query: 299 gtacaacacaagcaattcatacaaaacttatgatattgagcataactgcaaaatacttta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gtacaacacaagcaattcatacaaaacttatgatattgagcataactgcaaaaaacttta 560
Query: 359 ttgttccttttccccctcactcccctcttccccacccccaccccgcttgtattttgagat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttccttttccccctcactcccctcttccccacccccaccccgcttgtattttgagat 620
Query: 419 aaggtcttttttgttaagttatttatttactttacatccaaattacagcttcccctccct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggtcttttttgttaagttatttatttactttacatccaaattacagcttcccctccct 680
Query: 479 ccttttcgcccaatccctccctccctcttgacccccacttcatctttgacatatcaagtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttttcgcccaatccctccctccctcttgacccccacttcatctttgacatatcaagtt 740
Query: 539 gctgtaggattagggcattttctcctagggaaggcag 575
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgtaggattagggcattttctcctagggaaggcag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 977
Length adjustment: 10
Effective length of query: 565
Effective length of database: 967
Effective search space: 546355
Effective search space used: 546355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_m15.g1 MSMg01no490_m15.g1 CHROMAT_FILE:
MSMg01no490_m15.g1 PHD_FILE: MSMg01no490_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:29 2005
(634 letters)
>mm_chr2_143159774_143160807
Length = 1034
Score = 1166 bits (603), Expect = 0.0
Identities = 627/635 (98%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 1 cacacccctaagccccttaccccataaaaacccctagctttccagcctcgtggctgacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 cacacccctaagccccttaccccataaaaacccctagctttccagcctcgtggctgacat 964
Query: 61 ccggtatctcctgtatgggatgcatgttggtccggagctgtcctcatgtaattacatcaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ccggtatctcctgtgtgggatgcatgttggtccggagctgtcctcatgtaattacatcaa 904
Query: 121 gagatggtccttcgtga-ttttttgggtgcacgccgaatcggaattgggtgggggtttcc 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gagatggtccttcgtgatttttttgggtgcacgccgaatcggaattgggtgggggtttcc 844
Query: 180 ccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggagagagtaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggagagagtaga 784
Query: 240 tttttatagagcattgggaagccatccataaagcagggtactggcccaatgaactatcag 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agttgatagagcattgggaagccatccataaagcagggtactggcccaatgaactatcag 724
Query: 300 atccttggttctctcacaaggagggaacagggagctgtggggctctagacacaatggagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atccttggttctctcacaaggagggaacagggagctgtggggctctagacacaatggagt 664
Query: 360 atcgatggagagtgctgggctcactggatctgactaccatcctgagttccatgggctgaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atcgatggagagtgctgggctcactggatctgactaccatcctgagttccatgggctgaa 604
Query: 420 tgagcttcttcacttgctagtccctttcctgcttctctgattatcaccattttcttccag 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 603 tgagcttcttcacttgctagtccctttcctgcttctctgattgtcaccattttcttccag 544
Query: 480 ccccagagctgatttccacgggcagcatcatctacattttgtcttctagaacccatttga 539
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 543 ccctagagctgatttccacgggcagcatcatctacattttgccttctagaacccatttga 484
Query: 540 attcagctagtggaggcattctcaagaaattgagggttgaggcagagaaagcttttggag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attcagctagtggaggcattctcaagaaattgagggttgaggcagagaaagcttttggag 424
Query: 600 tttactcccatatctcactgtggcttctgtttggt 634
|||||||||||||||||||||||||||||||||||
Sbjct: 423 tttactcccatatctcactgtggcttctgtttggt 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
