BAC Information

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BAC

Clone NameMSMg01-490N09
Chromosome2 (Build37)
Map Location 130,856,818 - 131,002,857
singlet/doubletdoublet
Overlap geneGfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1
Upstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768
Downstream geneCenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490N09.T7 (MSMg01no490_n09.b1)MSMg01-490N09.TJ (MSMg01no490_n09.g1)
ACCAG568972AG568973
length752751
length of high quality
(start - end)
323 (330 - 652)632 (81 - 712)
definitionCHROMAT_FILE: MSMg01no490_n09.b1 PHD_FILE: MSMg01no490_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:32 2005CHROMAT_FILE: MSMg01no490_n09.g1 PHD_FILE: MSMg01no490_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,856,818 - 130,857,140)(131,002,226 - 131,002,857)
sequence
GGAAACTTATAAATTGCGGTCGCTAAANGANNNCCAAATCTAATCAAGGC
GCGGAANNCCACATTTATCAAAATCAGAGAGTTAGGNTGGGTCCACACTG
GGCCATGGCTGATGAAATGTTGGACCAAGTGATAACACCAAACTTTTGCA
CAGAAAATATTTTCATCTGGGGCCTTCCCTGGAGTTCACAGGTTAAAGTG
TTGGAAGGAACATGGGTCCCTGAGCCACCACTTACACAAAAACTACCTGA
TCTTTTTGAACTATTCTGGGTTTCTGTTGCTAAAATTCCTTCCCAGAGAG
AAATGTAAGCAATGTCTGTTTCTTCATTGGTCCCAGCAAGAAACCAAGGC
ACAATTCCACCAAAGTTCTCTACAAAACCAGTGAGTTTATTGGGCTTCCG
TGCAGAACATACATGAGGGGCCACCCACAGAAGTGTGGATACTCCTCCCC
CTAACAATCCGCACCCTGAAAAAGCCTTACCCAGCAGGGATGAGGGCTTC
CCCAGACCCACATCGATGGTGCTCCCATTCCATTTTTCCCTGGCATGCAA
AGAGATAGACAGAAAAATAGATTATATATAATATACACATAAATTAGAAA
AATAGATTATATAATATACACATAAATTATATATTATATATGTAATATAT
AATATATAATATACAGATAGATTATATATAATACAGATAGATTATATATG
ATATATAAAACACACAGAAATAGGGTATATATAATATATAATACACAAAC
TA
NNNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAATGG
AGGNGACACTATAGAAGTACTCAAAGAATTCTGGGGAAGGAGGGTGTTAC
ATCTTTTTGATAGTCTTGAGGAACCTTAGCCTTAAACTTTGTTAGTGAGA
AGCTCCTGGTGGGGTAGGAGATAGGGAGCAGGTCAGCCCATATGCACCTG
ATGACCCAGCCCACCAAAGCTAAAGTCAGCAGGAACAAGAACAACTTTGG
GATGGCTGTGAGCCAGGTTGGAGCTGGAGGTGCATACAAGGCACCCTTAT
CTTACCCTACGAGGGAGTTCTTCCTGCTTTTGATGGACATTTTCAAGCCT
GTTAGCCACAGCACAGTAACAGAAGGCAAAGTTACTGGGAAACAAATTGC
AGCCCCATGAATTGGTAGCTCGCCGCGCAAGGCCACTCCCCCCACTCCAG
TCCAAAGGTGAAGGAGGCATGCCCTTCTTTCAGTGCCCAGCCCCTCCCCT
CATGGCTCTTCCTTTCTGAGGCCTTCAGGTTCCAGCCAAGGAAAAGCCTG
ATCAGGGTAGTACCAAACCGGTTTTCCCACCTTGACTACTGCTGGCATAT
TACCCCTGGTAAATCCCCAAACCCAACATAGCCCAGCCACCAAGTTCTCC
CTACCTTGGAATGTAAAGGGGTGGGGGATATCTAAGTCCCCCTTTGTGCC
TTGTTTGCCTTAGGTGGGGGCCAGAAAGGTTGAGTCTTGTATTTCTAACA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_n09.b1 MSMg01no490_n09.b1 CHROMAT_FILE:
MSMg01no490_n09.b1 PHD_FILE: MSMg01no490_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:32 2005
         (323 letters)



>mm_chr2_130856618_130857340
          Length = 723

 Score =  547 bits (283), Expect = e-160
 Identities = 313/323 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcccagcaagaaaccaaggcacaattccaccaaagttctctacaaaaccagtgagttta 60
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 201 gtcccagcaagaaaccaaggcacaattccaccaaagttcactagaaaaccagtgagttta 260

                                                                       
Query: 61  ttgggcttccgtgcagaacatacatgaggggccacccacagaagtgtggatactcctccc 120
           |||||||||||||||||||||||||||||||  ||  | |||||||||||||||||||||
Sbjct: 261 ttgggcttccgtgcagaacatacatgaggggttacttagagaagtgtggatactcctccc 320

                                                                       
Query: 121 cctaacaatccgcaccctgaaaaagccttacccagcagggatgagggcttccccagaccc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaacaatccacaccctgaaaaagccttacccagcagggatgagggcttccccagaccc 380

                                                                       
Query: 181 acatcgatggtgctcccattccatttttccctggcatgcaaagagatagacagaaaaata 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattgatggtgctcccattccatttttccctggcatgcaaagagatagacagaaaaata 440

                                                                       
Query: 241 gattatatataatatacacataaattagaaaaatagattatataatatacacataaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattatatataatatacacataaattagaaaaatagattatataatatacacataaatta 500

                                  
Query: 301 tatattatatatgtaatatataa 323
           |||||||||||| ||||||||||
Sbjct: 501 tatattatatatataatatataa 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no490_n09.g1 MSMg01no490_n09.g1 CHROMAT_FILE:
MSMg01no490_n09.g1 PHD_FILE: MSMg01no490_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:32 2005
         (632 letters)



>mm_chr2_131002026_131003057
          Length = 1032

 Score = 1168 bits (604), Expect = 0.0
 Identities = 625/632 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggggaaggagggtgttacatctttttgatagtcttgaggaaccttagccttaaacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ctggggaaggagggtgttacatctttttgatagtcttgaggaaccttagccttaaacttt 773

                                                                       
Query: 61  gttagtgagaagctcctggtggggtaggagatagggagcaggtcagcccatatgcacctg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gttagtgagaagctccgggtggggtaggagatagggagcaggtcagcccatatgcacctg 713

                                                                       
Query: 121 atgacccagcccaccaaagctaaagtcagcaggaacaagaacaactttgggatggctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atgacccagcccaccaaagctaaagtcagcaggaacaagaacaactttgggatggctgtg 653

                                                                       
Query: 181 agccaggttggagctggaggtgcatacaaggcacccttatcttaccctacgagggagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agccaggttggagctggaggtgcatacaaggcacccttatcttaccctacgagggagttc 593

                                                                       
Query: 241 ttcctgcttttgatggacattttcaagcctgttagccacagcacagtaacagaaggcaaa 300
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttccggcctttgatggacattttcaagcctgttagccacagcacagtaacagaaggcaaa 533

                                                                       
Query: 301 gttactgggaaacaaattgcagccccatgaattggtagctcgccgcgcaaggccactccc 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 532 gttactgggaaacaaattgcagccccatgaattggtagctcgctgtgcaaggccactccc 473

                                                                       
Query: 361 cccactccagtccaaaggtgaaggaggcatgcccttctttcagtgcccagcccctcccct 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 472 cccactccagtccaaaggtgaaggcggcatgcccttctttcagtgcccagcccctcccct 413

                                                                       
Query: 421 catggctcttcctttctgaggccttcaggttccagccaaggaaaagcctgatcagggtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catggctcttcctttctgaggccttcaggttccagccaaggaaaagcctgatcagggtag 353

                                                                       
Query: 481 taccaaaccggttttcccaccttgactactgctggcatattacccctggtaaatccccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taccaaaccggttttcccaccttgactactgctggcatattacccctggtaaatccccaa 293

                                                                       
Query: 541 acccaacatagcccagccaccaagttctccctaccttggaatgtaaaggggtgggggata 600
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 292 acccaacatagcccagccaccaagttctccctaccgtggaatgtaaaggggtgggggata 233

                                           
Query: 601 tctaagtccccctttgtgccttgtttgcctta 632
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tctaagtccccctttgtgccttgtttgcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)