BAC Information

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BAC

Clone NameMSMg01-491I23
Chromosome2 (Build37)
Map Location 131,305,172 - 131,488,035
singlet/doubletdoublet
Overlap geneSmox, Adra1d
Upstream genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
Downstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491I23.T7 (MSMg01no491_i23.b1)MSMg01-491I23.TJ (MSMg01no491_i23.g1)
ACCAG569525AG569526
length737756
length of high quality
(start - end)		652 (36 - 687)620 (67 - 686)
definitionCHROMAT_FILE: MSMg01no491_i23.b1 PHD_FILE: MSMg01no491_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:30 2005CHROMAT_FILE: MSMg01no491_i23.g1 PHD_FILE: MSMg01no491_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,487,393 - 131,488,035)(131,305,172 - 131,305,781)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAACC
TACTTTACCAAAAAAATGTGAGTGCGGGAAGGGGAAAGAGAGAGAGAGAG
AATCTAAGCTACCAAATATAATTTTTAATATCATGATCCCTCAATGTATA
GGCTTTACAGAGCAGATGCTTGGATGTTCACATATTTGCCATCAGCTGAC
ATACTTAGTGCCAAATCACCTCCTGAGGAGTTTGCACTGGACATGACCTT
CATCATGGTCATTTCTGAGTGGTAATCACTGAACCCCACTTGAATACCCT
AAGCTCTTACTGCTTCATGATAAAGACCATCTCATGGAGCATTCTTTGGT
ATGATAGATTCAAACTCAAAGTCTGCTGGTGAAAGAGCCATGGTGAATGT
TCTCAGCTCCGTACACATTTTGGTCCAGTGTCTGTTGCTATAATTAAATA
TCACAAATGGATGAAGCTGAGTGGTTCAAGGTCAAGGGTGTCCCTGAAGA
CAGTTTCTTCGCTGATGTAACCCTCTACAGTGTCCTAGGAAAGCACAAAA
CACAATATGGCATGAAAGAGCAAGCTCGATGAGTTGGACCCTTCCTTTCT
TTATGAAGCCACAAAGCAGCCACCATCATTACCTCATACAGTCTTATACT
ACCTTCAGTGACCTTCTTCAAAATACCATTAATGTGTCACTTTGAAGACT
AAGTTTCAACCTGAGCTTTGGAAATGGCAAACACCTG

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGGTGTCATTTTCTCAATTGGGATTCCTCCAC
TTCAGTGTCAAGCTGTCTTAAGTCTAGCCAGCAACTAGATGACTGTTAAT
CATGTTTGTCAAAAGTCATAAAACATACAATATGAAGAATGAGCTGTAAC
AGAAACCTGTCTTTAGTTATTAACTTGGGCTCACCACACTATCCCAGGAA
TGTTAAAGATCAGGAGGGGTCAGAGAACATACATGAAAACTTTACTTTCT
ATTAATTTTTACCTCAAACTTCTAAAACAACAACAACAACAACAACAAAA
GGTTATTAGTTTTAAAGATCTCTGAAGTGAAGCTGCCTATTAACTTGGAA
GGCATTTTAGATTTAATGAAATATCCTCAGAGGTACAATTGTTTAAATAA
GTACAGAAAAGCTCTTTCAATGAGATAAAAATATAAGCTTGGGAAGTGTC
ATGTCATGGACCTGTGAAATGGCTCAGCAGCTTAGACCCTTACTGCCAAG
TGTGACAACCAGAGTTCTGTCCCCAGAACTCACATGGGGGAGGGAGAGAG
CTGACTCCCCTAAGTTGTCTTCTTGTCTTCACACAAGTCCCATGGCACCC
ATGTACATACACACACACACACACACACACACACACANANANANAAAAAT
GTATATGTATATATATATACACTCACATGCTTAAAACAATAGACAAATTA
AGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_i23.b1 MSMg01no491_i23.b1 CHROMAT_FILE:
MSMg01no491_i23.b1 PHD_FILE: MSMg01no491_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:30 2005
         (652 letters)



>mm_chr2_131487168_131488217
          Length = 1050

 Score = 1149 bits (594), Expect = 0.0
 Identities = 633/650 (97%), Gaps = 10/650 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccaacctactttacca---aaaaaatgtgagtgcgggaaggggaaagagagagaga 62
           |||||||||||||   |  |   ||||||||||||||||||||||||  ||||||||| |
Sbjct: 868 aattccaacctac---a--aaagaaaaaatgtgagtgcgggaagggg--agagagagata 816

                                                                       
Query: 63  gagaatctaagctaccaaatataatttttaatatcatgatccctcaatgtataggcttta 122
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 815 gagaatctaagctaccaaatataatttttaatatcataatccctcaatgtataggcttta 756

                                                                       
Query: 123 cagagcagatgcttggatgttcacatatttgccatcagctgacatacttagtgccaaatc 182
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagagtagatgcttggatgttcacatatttgccatcagctgacatacttagtgccaaatc 696

                                                                       
Query: 183 acctcctgaggagtttgcactggacatgaccttcatcatggtcatttctgagtggtaatc 242
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 695 acctcctgaggagtttgcactggacatgaccttcatcatggtcgtttctgagtggtaatc 636

                                                                       
Query: 243 actgaaccccacttgaataccctaagctcttactgcttcatgataaagaccatctcatgg 302
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 635 actgaaccccacttgaataccctaagctcttactgcttcatgagaaagaccatctcatgg 576

                                                                       
Query: 303 agcattctttggtatgatagattcaaactcaaagtctgctggtgaaagagccatggtgaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agcattctttggtatgatagattcaaactcaaagtctgctggtgaaagagccatggtgaa 516

                                                                       
Query: 363 tgttctcagctccgtacacattttggtccagtgtctgttgctataattaaatatcacaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgttctcagctccgtacacattttggtccagtgtctgttgctataattaaatatcacaaa 456

                                                                       
Query: 423 tggatgaagctgagtggttcaaggtcaagggtgtccctgaagacagtttcttcgctgatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggatgaagctgagtggttcaaggtcaagggtgtccctgaagacagtttcttcgctgatg 396

                                                                       
Query: 483 taaccctctacagtgtcctaggaaagcacaaaacacaatatggcatgaaagagcaagctc 542
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 395 taaccctctacagtgtcctaggaaagcacaaagcacaatatggcatgaaagagcaagctc 336

                                                                       
Query: 543 gatgagttggacccttcctttctttatgaagccacaaagcagccaccatcattacctcat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gatgagttggacccttcctttctttatgaagccacaaagcagccaccatcattacctcat 276

                                                             
Query: 603 acagtcttatactaccttcagtgaccttcttcaaaataccattaatgtgt 652
           ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 275 acagtcttatactaccttcggtgaccttcttcaaaataccattaatgtgt 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1050
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1040
Effective search space:   667680
Effective search space used:   667680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_i23.g1 MSMg01no491_i23.g1 CHROMAT_FILE:
MSMg01no491_i23.g1 PHD_FILE: MSMg01no491_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
         (620 letters)



>mm_chr2_131304972_131305991
          Length = 1020

 Score = 1135 bits (587), Expect = 0.0
 Identities = 607/619 (98%), Gaps = 9/619 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggtgtcattttctcaattgggattcctccacttcagtgtcaagctgtcttaagtcta 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctgtcattttctcaattgggattcctccacttcagtgtcaagctgtcttaagtcta 260

                                                                       
Query: 61  gccagcaactagatgactgttaatcatgtttgtcaaaagtcataaaacatacaatatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagcaactagatgactgttaatcatgtttgtcaaaagtcataaaacatacaatatgaa 320

                                                                       
Query: 121 gaatgagctgtaacagaaacctgtctttagttattaacttgggctcaccacactatccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgagctgtaacagaaacctgtctttagttattaacttgggctcaccacactatccca 380

                                                                       
Query: 181 ggaatgttaaagatcaggaggggtcagagaacatacatgaaaactttactttctattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatgttaaagatcaggaggggtcagagaacatacatgaaaactttactttctattaat 440

                                                                       
Query: 241 ttttacctcaaacttctaaaacaacaacaacaacaacaacaaaaggttattagttttaaa 300
           |||||||||||||||||||||||||||||||||         ||||||||||||||||||
Sbjct: 441 ttttacctcaaacttctaaaacaacaacaacaa---------aaggttattagttttaaa 491

                                                                       
Query: 301 gatctctgaagtgaagctgcctattaacttggaaggcattttagatttaatgaaatatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 492 gatctctgaagtgaagctgcctattaacttggaaggcattttagatttaatgaaatatct 551

                                                                       
Query: 361 tcagaggtacaattgtttaaataagtacagaaaagctctttcaatgagataaaaatataa 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 tcagaggtacaattgtttaaataagtacagaaaggctctttcaatgagataaaaatataa 611

                                                                       
Query: 421 gcttgggaagtgtcatgtcatggacctgtgaaatggctcagcagcttagacccttactgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gcttgggaagtgtcatgtcatggacctgtgaaatggctcagcagcttagacccttactgc 671

                                                                       
Query: 481 caagtgtgacaaccagagttctgtccccagaactcacatgggggagggagagagctgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caagtgtgacaaccagagttctgtccccagaactcacatgggggagggagagagctgact 731

                                                                       
Query: 541 cccctaagttgtcttcttgtcttcacacaagtcccatggcacccatgtacatacacacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 cccctaagttgtcttcttgtcttcacacaagtcccatggcacccatgtacatacacacac 791

                              
Query: 601 acacacacacacacacaca 619
           |||||||||||||||||||
Sbjct: 792 acacacacacacacacaca 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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