BAC Information

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BAC

Clone NameMSMg01-491L21
Chromosome2 (Build37)
Map Location 93,306,068 - 93,446,125
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
Downstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L21.T7 (MSMg01no491_l21.b1)MSMg01-491L21.TJ (MSMg01no491_l21.g1)
ACCAG569665AG569666
length739751
length of high quality
(start - end)
346 (63 - 408)241 (75 - 315)
definitionCHROMAT_FILE: MSMg01no491_l21.b1 PHD_FILE: MSMg01no491_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:44 2005CHROMAT_FILE: MSMg01no491_l21.g1 PHD_FILE: MSMg01no491_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,445,780 - 93,446,125)(93,306,068 - 93,306,308)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTT
TCTCTCCCTCTTCCTCTCCCTCTCCCTCTTCCTCTCTCCTCCTCCCTATC
CCTCTATGTACAGAAAACCACAAGGGTCTTTCTCATATAGCATTATTCTT
CATTCTTTAAAAATAAGCCTTTGCCTTTTTTGCTTCCTAAAGAAACAGGC
ACCTCAGAAAGAGAAGAGCATTAGAAGAAAAAAGCCATCACGTCTGCTCT
CCCCAGACTCCTGCAGTATTGACCAGCTTTCCACCCTGAGTGTCAGGGCC
TGTTTTAGGTGCAACGGTGAACTAATGCAGATGTCCCTTGTGACCCCACA
GAGAATAGATACAGTGTCTTTGCAAGACTGTAAGAAGTTCCTTGTATTTT
AAATCAGAAAACAACAGTGAAGAAGGCAAACAGCTGGGTGGAAGGCCTTA
TTGAGGAGGTCTGGGGAAGTGTTGCTCAAGAGGTGAAGATGGAGGCAGGA
GAAAAGCGTGTTTAAATAGGAGGAAACGGCTGTGCAAAGGGCCTGTGGCA
CAAGGAGCAGATTAAGGTTCAGAAGCTGCAGGATCATCTGGCATTAGGGC
TGTGTGGACTGCTCACATTTTTGAATCTTAAGAACAAAGAAAGTACTTCA
AAGCTCTTTTCAATGTGATGAGTGTAATTGAATTTGGACTTGAATTTTGG
CGTGTATACATGTGCCCATCAGTTACTTCTGTAACGAAG
TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGCCACACAAGAGGCACTGTCTTCTGCACTCCTGC
TGAGGTTTTCTCCAAAGGCGCTGACATCCTGGGGTTCTGGTCCTAGTGTG
CAGGCCTCGTTTAGCACAAGAAACCCAAGCTTAGAATACAGTTTCGATAA
GCATCCTTTTATGCTGAGCAGGTCACAGACCAGACAACAAAAGGTTCATC
CTCCTGCCTGGCCATCATCCATCCATCAGCAAGACCATGCTCCAGTTTGG
ACTTCCTGGATTCTGCATTCTTCATGCAGGAGTTAGAGCATGTGAGGAGA
TCAGCTCGGGTCCATAGCTGGGCCCACCCACCTGCTTCTCTTCCTGTCCT
CAGTGTCACAACAATACAGGATTCAGTCGTGAGGATACCCCAACCCATCT
GCTCATTGCTCCACACAGCTACTGCCTCCAGGAGTTGAACACCTGTGACA
GAGCCGATTACCTAGGGATAGAGGAGCCAAGAGGCTTGGGTTGCCCTGGA
GGCTGTATTTGGGCCAGCTGAACAGAGACTCCCCGTGTTTCTACACAGAG
GCATGGTCAAGATGATCCTGTAGACATAGTTACCCCTCTTATCTGAGACT
GTGTCCTTGTCCCTTAGAACTTGTGCACAGTATCTGGGACTGTAAGGGCG
GGGCCTGCGTAGATATAGACCCAGCCACTCATTACCTAACATGGATGGAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l21.b1 MSMg01no491_l21.b1 CHROMAT_FILE:
MSMg01no491_l21.b1 PHD_FILE: MSMg01no491_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:44 2005
         (346 letters)



>mm_chr2_93445556_93446301
          Length = 746

 Score =  615 bits (318), Expect = e-180
 Identities = 339/346 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctccctctccctcttcctctctcctcctccctatccctctatgtacagaaaaccaca 60
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cctcttcctctccctctccctctctcctcctccctatccctctatgtacagaaaaccaca 511

                                                                       
Query: 61  agggtctttctcatatagcattattcttcattctttaaaaataagcctttgccttttttg 120
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 510 agggtctttctcatatagcattattctgcattctttaaaaataagtctttgccttttttg 451

                                                                       
Query: 121 cttcctaaagaaacaggcacctcagaaagagaagagcattagaagaaaaaagccatcacg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 cttcctaaagaaacaggcacctctgaaagagaagagcattagaagaaaaaagccatcacg 391

                                                                       
Query: 181 tctgctctccccagactcctgcagtattgaccagctttccaccctgagtgtcagggcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctgctctccccagactcctgcagtattgaccagctttccaccctgagtgtcagggcctg 331

                                                                       
Query: 241 ttttaggtgcaacggtgaactaatgcagatgtcccttgtgaccccacagagaatagatac 300
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttttaggtgtaagggtgaactaatgcagatgtcccttgtgaccccacagagaatagatac 271

                                                         
Query: 301 agtgtctttgcaagactgtaagaagttccttgtattttaaatcaga 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agtgtctttgcaagactgtaagaagttccttgtattttaaatcaga 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no491_l21.g1 MSMg01no491_l21.g1 CHROMAT_FILE:
MSMg01no491_l21.g1 PHD_FILE: MSMg01no491_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:45 2005
         (241 letters)



>mm_chr2_93305868_93306508
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggcactgtcttctgcactcctgctgaggttttctccaaaggcgctgacatcctgggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggcactgtctgctgcactcctgctgaggttttctccaaaggcgctgacatcctgggg 260

                                                                       
Query: 61  ttctggtcctagtgtgcaggcctcgtttagcacaagaaacccaagcttagaatacagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctggtcctagtgtgcaggcctcgtttagcacaagaaacccaagcttagaatacagttt 320

                                                                       
Query: 121 cgataagcatccttttatgctgagcaggtcacagaccagacaacaaaaggttcatcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgataagcatccttttatgctgagcaggtcacagaccagacaacaaaaggttcatcctcc 380

                                                                       
Query: 181 tgcctggccatcatccatccatcagcaagaccatgctccagtttggacttcctggattct 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctgaccatcatccatccatcagcaagaccatgctccagtttggacttcctggattct 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)