BAC Information

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BAC

Clone NameMSMg01-491N12
Chromosome2 (Build37)
Map Location 21,450,323 - 21,450,515
singlet/doubletsinglet
Overlap geneGpr158
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491N12.T7 (MSMg01no491_n12.b1)MSMg01-491N12.TJ (MSMg01no491_n12.g1)
ACCAG569743AG569744
length742767
length of high quality
(start - end)
576 (63 - 638)195 (114 - 308)
definitionCHROMAT_FILE: MSMg01no491_n12.b1 PHD_FILE: MSMg01no491_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:52 2005CHROMAT_FILE: MSMg01no491_n12.g1 PHD_FILE: MSMg01no491_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGTTAGACGACTCTCTATAGTCCGAAGATCGCGCGGAATCTTTGGTT
ATTCCTGTACACCATTTTTAATGGGGTTATTTGAATTTCTGGAATCCAGC
TTCTTGAGCTCTTTGTATATGTTGTATATTAGTCCCCTATCAGATTTAGG
ATTGGTTAAAAATCCTTCCGCAATCAGTTGGTGGCCTTTTTGTCTTATTA
ACAGTGTCTTTTGCCTTAGAGAAACTTTGCAATTTCATGAGGTCCCATTT
GTTGATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTGTTTAGGAATT
TTTCCCCTGTGTTTTTATCTTTGCAGCTTTTCCCCACTTTCTCCTCTATT
AATTTCAGTGTCTCTGGATTTCTGTGGAGTTATTTGATCCACTTGGACTT
GAGCTTTGTACAAGGAGATAAGAATGGATCAATTTGCATTCTTCTCCATG
CTAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTT
CCACTGGATGGTTTTAGATCCTTTGTCAAAGATCAAGTGACCATAGGTGT
GTAGATTCATTTTTGGGTCTTCAATTCTATTCCATTGGTTTACCTGTCTG
GCACTTTACCAGTACCATGCAGTTTTTATCACAATTGTTCTGTAGTACAG
CTTAATATCAGGCATGGCGATTCCACCAGAGGTTCTGTTATTGTTGAGAA
TAGTTTTTGCTCTCCTAAGAATTTTGTTATTCCAGATGAATT
AGGTTTGGNGGNNGTGGGNCCTCCCTACTCGCTGAANNANAGAAGGACTT
GCCATTTCGGGGAAGAACCANCAAAAAGAATAAAAGCTTAGACACAAATT
AAACTTTATACCTTCAAAACTTGTACACTTAACACCAGAGATTGTTGTTA
AAAATTAAAACTTAAACAAGTGTGAGTCTTCCTATATTTATGGGTTTAAA
TAATCAATATTCTGGTGATCATGCCAATGTGTATGTATGTTTTTTTATGT
GTGTGTATATGTGATATAATGTGTATGAATGTATTGTGTGGAAGGTGTAT
ACATGTTCGCTCGCATAGGCGCCNGCCNCACCACCCGAGCANACCTTTTT
TTTGTTGCATCAAACCTTCAAGGGAACAAGGGTATCCCTTCCCATTGATG
CCACACAAGACCTTTTTTTTTCTTTCAGTCCTTCAACTTCTCCATGGTGG
TCCCTGTGCTCAGTCTGATGGTTGGATGCAGTCATTCTACATTTGTATTG
GCAGGATCTGGTAGAGTCTCTCAGGAGACTGCTATATTAGGCTCCTGTCT
GCTAACACTTATTGTTATCTACAACAATATCTGCATATTGGTTGTCTGCA
TGTGTGTAAGTATTCCCATTGAGTTGAACTCTCTTGGTGGGACTAAACTT
TTTTTTTTATTTTACACCATAGACCCTGTATTCCGTTTATGAAAGGATAT
TTTTCTTGGCGTTAAAATCTTTGGAGAAAGGGGACGTGTACACCCATCCC
ACTACTTGGTTTGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_n12.g1 MSMg01no491_n12.g1 CHROMAT_FILE:
MSMg01no491_n12.g1 PHD_FILE: MSMg01no491_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:52 2005
         (195 letters)



>mm_chr2_21450202_21450796
          Length = 595

 Score =  337 bits (174), Expect = 4e-97
 Identities = 188/198 (94%), Gaps = 10/198 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaaacttgtacacttaacaccagagattgttgttaaaaattaaaacttaaacaagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcaaaacttgtacacttaacaccagagattgttgttaaaaattaaaacttaaacaagtgt 255

                                                                       
Query: 61  gagtcttcctatatttatgggtttaaataatcaatattctggtgatcatgccaatgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagtcttcctatatttatgggtttaaataatcaatattctggtgatcatgccaatgtgta 195

                                                                       
Query: 121 tgtatgtttttt-----tatgtgtgtgtatatgtgatataatgtgtatgaatgtattgtg 175
           ||||||     |     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgtatg-----tgcacatatgtgtgtgtatatgtgatataatgtgtatgaatgtattgtg 140

                             
Query: 176 tggaaggtgtatacatgt 193
           ||||||||||||||||||
Sbjct: 139 tggaaggtgtatacatgt 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)