BAC Information

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BAC

Clone NameMSMg01-491P18
Chromosome2 (Build37)
Map Location 143,135,395 - 143,136,023
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491P18.T7 (MSMg01no491_p18.b1)MSMg01-491P18.TJ (MSMg01no491_p18.g1)
ACCAG569849AG569850
length7401,241
length of high quality
(start - end)		628 (66 - 693)---
definitionCHROMAT_FILE: MSMg01no491_p18.b1 PHD_FILE: MSMg01no491_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:04 2005CHROMAT_FILE: MSMg01no491_p18.g1 PHD_FILE: MSMg01no491_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCATCAC
AGGATATGAAGCAAATATAGTTACAAATTTGCTACTCTGGGGTGAGATGG
ATTCTGGACATCAAAAGGAGAGCTCAGGAGACTCCAGCAGGCTTCAGCTA
GAAGGACAGAAGACAATCAGGTGACCCTGCAGTGGAGGGAATCACATTCA
TGGGGGTAGGGAGAAACAAAGACAGACAGACAGAAAGAGACAGACAGAGA
GACAGACAGAGACAAACAGACAGACACACAGAGAGACAGAGAAAGAGACT
GAGACAGAAAAAGAGAGAGAGAGACAGAGACAGGCAGTCAAAGGTTTAGT
TATTATCACGCCTATATGCCTGATTTTCTCTGTCACCCACTGTAGACAGA
AGCAATTGTCAGCCATATTTTTTTTAAAGACATGGTCTCACTATATGGGT
AGCCCTGGCTCTTCTGGAACTTAATACATAGACTAGGCTAGCATGAAAAT
TCAGAGAGATATCTGCCTCTACCTGAGTGCTATGATTAAACACGTGTCAC
CATATACAGTGTGATTATAGCTATAGTTTTGTTTACCTTTGAGATTATAA
TAAAATTACAATGTTTCTCCTTTCCCTTTCCACCTCACAAACTCTCTCAT
ATACCCCTCCCCATTCTTCTTCAAATTCATGGTCTCTTTTCATTAATTGG
TATTGCATATAACAGACTGTTTATATAGGATATATATAAT

GGTAGTAGCTGCTGGCGAGGCGCCTGCCGATCTTCTCCTACACACAAGTA
CCTACNTCGCCTTCATAGATCTACTCCTGAATCTACAAGATCTTTCCATA
CTGATACTATATTACNGTTCATGATATGTATATTGCGATGATTGATTGTT
TCTAATTGATTCGCTTTTAACTCTGTGCTCACTTAATCTATGACAGCAGC
GCAACACGAGCTCTACTCACGACTCAGTACTGCAGCCGGACGAGCACAGC
ACATCTAGCGGACCCTATAGGTCATAGCGCCACACNCNATGCACAGCGCC
TGGTCATCGCGCGCGTCGCGCGTCCGCGAGGGGTGCGCTGTCCCTGCCCA
GACAGATAGTACGCATCTCTATAATAACCTGAAAGTGTACGCTCGATCGT
CATCTCAGTCTCCTCGAACGCTCCACACGATGCGATCAACCCGAGTATGT
GACCTGTGCGGCTTCTGTGTCTCGCTGAGTATGTATAATATCTCATACTA
GAAATGCTGATATAGACGACGTACACATCAATCATCACCACTTATAACAA
GTAATGTGAAGTATAGTCGTCACTGCGATCACGGAGAGACGAACGACAGC
AGTGACCGCGAAGTTCGTTGTGTGTACTACGCGCTATATATATGAAGACC
GCAGAACTCACGACGTACAAAGTCCAATCATCTTCTCGAAAGGATCTCAG
TCGCTATGCGTCGTGTCTACTAATGATAATAATAAAACGGCTATATGTCG
TCTGTCTATCGATACTTGCTGGAGGACAGCAATACATAGATAGCTCAGAT
CACCTCCATGTGTCGGATGACGCGGACATGCCGACTAACGTATCTCGACC
TATACATCGCTACTACGAAGCTCTGTACGTCGGGTGCGGACTACAATATT
CCCTAGCTGCTGCACTCATGACAGTCCTAGATCGCGATAATGACATGTTC
ACCTGCACTCGAGCGGATGTTACACCACTCTACGGCGATTGTATGATGTN
ATCTGCGCTTCCTAGCGATGCTCTTCTACTATCCTTNGTCTTGGCGGTCG
TGACTAGAAGGTGTACGTACTCCAGCGNCGCCCCCGAGCTTGGACTCACG
ACGGATTGATGCCACAGCACGGGGCGCCGACTCGATGCGCGTTGATGAGC
GACACGTCATAACGCGTAGCGCTTAGAAGGACTCGCTGCTGGCGCTGAGT
CTGCGGCGTCGCTAGCAGCTACCGTCGCGCTGTACATCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_p18.b1 MSMg01no491_p18.b1 CHROMAT_FILE:
MSMg01no491_p18.b1 PHD_FILE: MSMg01no491_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:04 2005
         (628 letters)



>mm_chr2_143135195_143136222
          Length = 1028

 Score = 1152 bits (596), Expect = 0.0
 Identities = 621/632 (98%), Gaps = 7/632 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagttacaaatttgctactctggggtgagatggattctggacatcaaaaggagagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagttacaaatttgctactctggggtgagatggattctggacatcaaaaggagagctc 260

                                                                       
Query: 61  aggagactccagcaggcttcagctagaaggacagaagacaatcaggtgaccctgcagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagactccagcaggcttcagctagaaggacagaagacaatcaggtgaccctgcagtgg 320

                                                                       
Query: 121 agggaatcacattcatgggggtagggagaaacaaagacagacagacagaaagagacagac 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 agggaatcacattcatgggggtagagagaaacaaagacagacagacagaaagagacagac 380

                                                                       
Query: 181 agagagacagacagagacaa----acagacagacacacagagagacagagaaagagactg 236
           ||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||
Sbjct: 381 agagagacagacagagacaaacagacagacagacacacagagagacagaggaagagactg 440

                                                                       
Query: 237 agacagaaaaagagagagagagacagagacaggcagtcaaaggtttagttattatcacgc 296
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacag--aaagagagagagagacagagacaggcagtcaaaggtttagttattatcacgc 498

                                                                       
Query: 297 ctatatgcctgattttctctgtcacccactgtagacagaagcaattgtcagccatatttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctatatgcctgattttctctgtcacccactgtagacagaagcaattgtcagccatatttt 558

                                                                       
Query: 357 ttttaaagacatggtctcactatatgggtagccctggctcttctggaacttaatacatag 416
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttt-aagacatggtctcactatatgggtagccctggctcttctggaacttaatacatag 617

                                                                       
Query: 417 actaggctagcatgaaaattcagagagatatctgcctctacctgagtgctatgattaaac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actaggctagcatgaaaattcagagagatatctgcctctacctgagtgctatgattaaac 677

                                                                       
Query: 477 acgtgtcaccatatacagtgtgattatagctatagttttgtttacctttgagattataat 536
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acgtgtcaccatatgcagtgtgattatagctatagttttgtttacctttgagattataat 737

                                                                       
Query: 537 aaaattacaatgtttctcctttccctttccacctcacaaactctctcatatacccctccc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaattacaatgtttctcctttccctttccacctcacaaactctctcatatacccctccc 797

                                           
Query: 597 cattcttcttcaaattcatggtctcttttcat 628
           ||||||||||||||||||||| ||||||||||
Sbjct: 798 cattcttcttcaaattcatggcctcttttcat 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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