BAC Information

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BAC

Clone NameMSMg01-492D13
Chromosome2 (Build37)
Map Location 130,037,069 - 130,037,441
singlet/doubletsinglet
Overlap geneTmc2
Upstream geneSlc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb
Downstream geneNol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492D13.T7 (MSMg01no492_d13.b1)MSMg01-492D13.TJ (MSMg01no492_d13.g1)
ACCAG570029AG570030
length721720
length of high quality
(start - end)
398 (316 - 713)373 (320 - 692)
definitionCHROMAT_FILE: MSMg01no492_d13.b1 PHD_FILE: MSMg01no492_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:23 2005CHROMAT_FILE: MSMg01no492_d13.g1 PHD_FILE: MSMg01no492_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCTTAAAGATCACTATTTTCCTAAATGCGCGGAATTAA
TAATTTACCTAAAGAAAACAGGAGAACACTGCTAAAGAGTTACAAGTCCT
TAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAA
AACAGGAAAACAAATCCAAACAGGTGATGGAAATGAACAAAACCATACTA
GACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGAC
GCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCA
TCAGCAACTTTATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGAC
TCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAA
GATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAA
ACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGA
CCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAA
GAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGAC
TGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAAT
GCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGT
AACATATAAAGGCAAGCCTAT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTGCAGAGGGGACACTTGGGCAAGTCTCC
CTGTGTGAATAAAATTCAGTGAGGTGAGATTCATCACACTTTAGTGTTCC
CTCAGTGCTAGGAAACTACCCAAGACCTTTATTTCAGGACTGCTTGGGCC
TGCCTGTCAGCCTTGGCAGCTGTGTCCACATGCTTAGCAGAGCTCCCAGA
GGCATCTCCAGATGACTGCAGAGGTGGCTGTTCAGAATAAATACCCAGTG
TCTCCATGTGTCNATTTGAAGAGACAGATGGAGCTCAATATGGGTCTTGA
AGTTGCTAACAGAAAACAAAGCCACACTTTAGGTTTCTGTACTGTGTGAT
CCCTCGTTTCTTGGACTGAAGACGGCAGGGAGCAGGAGTTGGTGACTAGA
GGAGACCAAGGTAACTGCAAAGCACCGCTTCAGGGGTTCCAGCAGTTTCC
TCATCGGAGCTAAATAAGCTCAGGCAGAACCCACTTTATGGATGGACAGA
GTCAGTCAGAAACGAGCGCTAAGGTCAACATACACAGCAGCTCCTCATCA
TCCTGCCCACCAAGGCCAGCTCCTGAGTAAACTTGTTCCTTCCACTGAAG
GAAGGCCACGGAGGGGCCTACCAATGGGAGGATGAATCAGAATGCTTGAA
GATCTGTCTGATGGACAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_d13.g1 MSMg01no492_d13.g1 CHROMAT_FILE:
MSMg01no492_d13.g1 PHD_FILE: MSMg01no492_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:23 2005
         (373 letters)



>mm_chr2_130036869_130037641
          Length = 773

 Score =  652 bits (337), Expect = 0.0
 Identities = 364/373 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagacagatggagctcaatatgggtcttgaagttgctaacagaaaacaaagccacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agagacagatggagctcaatatgggtcttgaagttgctaacagaaaacaaagccacactt 514

                                                                       
Query: 61  taggtttctgtactgtgtgatccctcgtttcttggactgaagacggcagggagcaggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taggtttctgtactgtgtgatccctcgtttcttggactgaagacggcagggagcaggagt 454

                                                                       
Query: 121 tggtgactagaggagaccaaggtaactgcaaagcaccgcttcaggggttccagcagtttc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tggtgactggaggagaccaaggtaactgcaaagcaccgcttcaggggttccagcagtttc 394

                                                                       
Query: 181 ctcatcggagctaaataagctcaggcagaacccactttatggatggacagagtcagtcag 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctcatcggagctgaataagctcaggcagaacccactttatggatggacagagtcagtcag 334

                                                                       
Query: 241 aaacgagcgctaaggtcaacatacacagcagctcctcatcatcctgcccaccaaggccag 300
           ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 333 aaacgagtgctaaggtcaacatacacagcagctccccatcgtcctgcccaccaaggccag 274

                                                                       
Query: 301 ctcctgagtaaacttgttccttccactgaaggaaggccacggaggggcctaccaatggga 360
           ||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |||||
Sbjct: 273 ctcctgagtaaacttgttccttccactgaaggaaggccaaggaggggcctcccggtggga 214

                        
Query: 361 ggatgaatcagaa 373
           |||||||||||||
Sbjct: 213 ggatgaatcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)