Query= MSMg01no492_f21.b1 MSMg01no492_f21.b1 CHROMAT_FILE:
MSMg01no492_f21.b1 PHD_FILE: MSMg01no492_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:34 2005
(582 letters)
>mm_chr2_18496532_18497513
Length = 982
Score = 978 bits (506), Expect = 0.0
Identities = 515/518 (99%), Gaps = 1/518 (0%)
Strand = Plus / Plus
Query: 66 tcacatgaagtttctgaatgtctgtcaagttgacaaaaacctaagcagcacaaaaacatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcacatgaagtttctgaatgtctgtcaagttgacaaaaacctaagcagcacaaaaacatt 325
Query: 126 aacacgtaaaataatataaggtgtcatctacaagagccacaaccacacacataagaaatg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aacacgtaaaataatataaggtgtcatctacaagagccacaaccacacacataagaaatg 385
Query: 186 gaccacttgcaaaaagtgggtgaccagggatctgtatgagtgcgcaggacttaattttgt 245
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 386 gaccacttgcaaaaagtgggtgaccagggatctgtatgagtgcacgggacttaattttgt 445
Query: 246 aattttaattttgtattttttttccttaaagagcctccaaaattgtttaaggttttattt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aattttaattttgtattttttttccttaaagagcctccaaaattgtttaaggttttattt 505
Query: 306 ttaatatttcattatacataagctttaaagcattcctctgtagattttgctaatttaaat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttaatatttcattatacataagctttaaagcattcctctgtagattttgctaatttaaat 565
Query: 366 attaatgttcatcataagtattcttggagatattttttgcataaaaa-ttcaatatatca 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 566 attaatgttcatcataagtattcttggagatattttttgcataaaaaattcaatatatca 625
Query: 425 atatgtcaaatctctcaaagttaaatagcaaatgcagtaaataccccaactatatttaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atatgtcaaatctctcaaagttaaatagcaaatgcagtaaataccccaactatatttaga 685
Query: 485 ataaacaacaaaactttgaaaaaatctgggaaacacctggaagaaaaataagagtcacta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ataaacaacaaaactttgaaaaaatctgggaaacacctggaagaaaaataagagtcacta 745
Query: 545 agaaatttttggaagcaataattaattgaatatgaagt 582
||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agaaatttttggaagcaataattaattgaatatgaagt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_f21.g1 MSMg01no492_f21.g1 CHROMAT_FILE:
MSMg01no492_f21.g1 PHD_FILE: MSMg01no492_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:34 2005
(524 letters)
>mm_chr2_18689965_18690881
Length = 917
Score = 862 bits (446), Expect = 0.0
Identities = 501/522 (95%), Gaps = 7/522 (1%)
Strand = Plus / Minus
Query: 1 cttgtgggtagctggctcatctgagattggggggaggggatcccatttaagtacttcata 60
||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 715 cttgtgggtagctggcttgtctgaga-tggggggaggggatcccacttaagtacttcata 657
Query: 61 tcatttttctctaaactaaggaggttcgcccagtttccaaccctccaggtgtgtctttaa 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcatttttctctaaactagggaggttcgcccagtttccaaccctccaggtgtgtctttaa 597
Query: 121 gagtgtataatcttgtttaggtactcttcaaagactcacagtggctggccatgaacactc 180
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gagtgtataatgttgtctaggtactcttcaaagactcacagtggctggccatgaacactc 537
Query: 181 ctggcagtgccacagactggagggaactctgtaactgcacatcagtgaagaacagtgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctggcagtgccacagactggagggaactctgtaactgcacatcagtgaagaacagtgtgg 477
Query: 241 tcttctattttccttgtgcacgttaggtgagttcacatcagagtccctagactgagaaga 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gcttccattttccttgtgcacgttaggtgagttcacatcagagtccctagactgagaaga 417
Query: 301 agcagagaggaaagagatctttttcttccttatgagttcctgagtcaaaaagtaaaagcg 360
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 416 agaagagaggaaagagatctttttcttccttatgagttcttgagtcaaaaagtaaaagcg 357
Query: 361 agttaagaaccattttccttgtgtcctgtggtatgtttatcctcagctcacaggaccttt 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 356 agttaagaaccattttccttgtgtcctgtggtatgtttatcctcaactcacaggaccttt 297
Query: 421 aagtaagtaatgcttttttttttttttaacttgctgattcagcaaatatctgcaatgctg 480
|||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 296 aagtaa----tgctttttttttttt--aacttgctgattcagtaaatatctgcaatgctg 243
Query: 481 tatatattgccaaataacatactaggctccaggggaaaaaag 522
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 242 tatatattgccaaataacatactaggctccagggaaaaaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 917
Length adjustment: 10
Effective length of query: 514
Effective length of database: 907
Effective search space: 466198
Effective search space used: 466198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
