Query= MSMg01no492_h13.b1 MSMg01no492_h13.b1 CHROMAT_FILE:
MSMg01no492_h13.b1 PHD_FILE: MSMg01no492_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:43 2005
(675 letters)
>mm_chr2_8349922_8350997
Length = 1076
Score = 1257 bits (650), Expect = 0.0
Identities = 665/672 (98%), Gaps = 5/672 (0%)
Strand = Plus / Minus
Query: 7 ggaattctgatctttc---gttcacagaccatagatcactaaaactgagcaaaatgaatc 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ggaattctgatc--tcatagttcacagaccatagatcactaaaactgagcaaaatgaatc 819
Query: 64 cactaagaacccttcctgcttaatcaaattgtatgttcactcaggttgccatgaagttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cactaagaacccttcctgcttaatcaaattgtatgttcactcaggttgccatgaagttta 759
Query: 124 tttccaaataaactgtgactaattgacatgcaaattgatgaattagtggcagactttaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tttccaaataaactgtgactaattgacatgcaaattgatgaattagtggcagactttaga 699
Query: 184 gtttataggtgttatccagaagaggaacttctgtgtctcccattcttgtgtttttatgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtttataggtgttatccagaagaggaacttctgtgtctcccattcttgtgtttttatgcc 639
Query: 244 aaaatagtgaagaacagatgcccaagtcaggctcagacaggatttctttccatgaatccc 303
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 638 aaaatagtgaagaacagatgcccaagtcaggctcaggcaggatttctttacatgaatccc 579
Query: 304 ttcaccactgtggtgtgaaatgcaggttctttgtaaatgggcacgaaaacgctcacccat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttcaccactgtggtgtgaaatgcaggttctttgtaaatgggcacgaaaacgctcacccat 519
Query: 364 cagattttccagtgcattaattaaattgaagagtctaaatctcttaacatgattctaggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cagattttccagtgcattaattaaattgaagagtctaaatctcttaacatgattctaggg 459
Query: 424 atctgatgaagtgactgtgcgctaagtgcaggctgccattgtaatgatgtaagaaattta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atctgatgaagtgactgtgcgctaagtgcaggctgccattgtaatgatgtaagaaattta 399
Query: 484 gatggtggttagatggttaacagaatcatgatatatgatcattcataaattgataatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gatggtggttagatggttaacagaatcatgatatatgatcattcataaattgataatgaa 339
Query: 544 gaaaatcacattaaaatcattttctatgacacccacttctttatgttacagcagctttga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaaaatcacattaaaatcattttctatgacacccacttctttatgttacagcagctttga 279
Query: 604 aaagttcaataagtgaagcaaattttccacatgagtttaattgtgaaattagcctccata 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaagttcaataagtgaagcaaattttccacatgagtttaattgtgaaattagcctccata 219
Query: 664 ttccccacagta 675
||||||||||||
Sbjct: 218 ttccccacagta 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_h13.g1 MSMg01no492_h13.g1 CHROMAT_FILE:
MSMg01no492_h13.g1 PHD_FILE: MSMg01no492_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:43 2005
(629 letters)
>mm_chr2_8308612_8309640
Length = 1029
Score = 1181 bits (611), Expect = 0.0
Identities = 627/637 (98%), Gaps = 8/637 (1%)
Strand = Plus / Plus
Query: 1 cataaagtgcaggtagcatttctagaaataaaaggatatgcttcgattcctgtgaggctg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaagtgcaggtagcatttctggaaataaaaggatatgcttcgattcctgtgaggctg 260
Query: 61 aaaacctgctttctattggatattttgttctcaggaaaagcttttagattagaagggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacctgctttctattggatattttgttctcaggaaaagcttttagattagaagggagg 320
Query: 121 ctaaacttaacaccaagaataaataggtgctggaggagatctgaaaataaggtagtgttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaacttaacaccaagaataaataggtgctggaggagatctgaaaataaggtagtgttt 380
Query: 181 gtgcttagggaatggtatctttgttttgtctttgctgctattgggatcagagactttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcttagggaatggtatctttgttttgtctttgctgctattgggatcagagactttcaa 440
Query: 241 taggacttggtattgctcttctgtcctaatctacgacatttaggtcatcactaaatatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggacttggtattgctcttctgtcctaatctacgacatttaggtcatcactaaatatta 500
Query: 301 tgaaagctattctcaaaacagatcctgatgctgagggaggtggcactggatttttatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaagctattctcaaaacagatcctgatgctgagggaggtggcactggatttttatccc 560
Query: 361 aacgcttagcaagcagagatcagcagatctctacctgtgactggctaacctgctctacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacgcttagcaagcagagatcagcagatctctacctgtgactggctaacctgctctacat 620
Query: 421 agagaattccaggccatccagggctatgtggtaataccagtctcaaacaccaccaagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaattccaggccatccagggctatgtggtaataccagtctcaaacaccaccaagaaa 680
Query: 481 actacatgtatttagtatctatatctatcagctatctatctatccatccatcacctatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actacatgtatttagtatctatatctatcagctatctatctatccatccatcacctatct 740
Query: 541 atctatctatctatctatctatctatctatctatctatctatctatctatctatcta--- 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctatctatctatctatctatctatctatctatctatctatctatctatctatctatct 800
Query: 598 -----atcacctgattgctacagggtttgaccatagt 629
||||||||||||||||||||||||||||||||
Sbjct: 801 atctaatcacctgattgctacagggtttgaccatagt 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
