BAC Information

Click to search

BAC

Clone NameMSMg01-492L06
Chromosome2 (Build37)
Map Location 76,353,692 - 76,549,641
singlet/doubletdoublet
Overlap geneOsbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492L06.T7 (MSMg01no492_l06.b1)MSMg01-492L06.TJ (MSMg01no492_l06.g1)
ACCAG570396AG570397
length714717
length of high quality
(start - end)
170 (120 - 289)234 (80 - 313)
definitionCHROMAT_FILE: MSMg01no492_l06.b1 PHD_FILE: MSMg01no492_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:00 2005CHROMAT_FILE: MSMg01no492_l06.g1 PHD_FILE: MSMg01no492_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,353,692 - 76,353,861)(76,549,408 - 76,549,641)
sequence
TAAATTTGCGGCGCTACACGACTCACATATTTCGGACTCCGCGGAANNCC
AGGCTATTTCGAAAAACAGGAGACCCTACCGCAAAGCCCAAACCCAAACT
ATAACAACTTTTACAACAGGCGATGTAGGATCAAAAAGGAACAACAGCCT
TTGTTCTGTAGTCTTTTACCACAGGGAAGCCATACATAGAGTGTAACAAG
GAATTTGTTTCCTTATTGGGTCAGATCTGTTTGGTTATTTATGTTATTTC
CTTTGGGGGGCCTTTCATTCTCTGTCTATGTTGTTATCATTTTTAGCTTA
TTTATTTGTTTTTTTTTTTGAGANAGNAAAAACACTAAACATCGGCAAAC
TAATATTTTTTTCTAGCTTTTTTGGGGGGATGGGGGCGCTGCAGCACATC
TTACTTGGAGTTTTCTACCCCACCTTAGATCATTTAATTCCTGTACTGGC
GAGCTTTGTGTCTACTTGACACTGCTGGAACTATCACACATTATGCACCT
TCCTTTGAGGAAATGCCTGCATGACATCTAACTGTAAGGTCTTTTCCTCT
CCCAGTGATTAATGCGGCAAGGCCTCTTGTGTCGGGGACCATCTCAAGGC
TGATCGCCTTGGTTTTTCCCCTCACTACGTCGTATTTTGTTTTGTGATGC
ACGCCCGTAATTAACATCCCTCTCGTGTTCCCTGTAACATTTCCTCGCTC
CTTGAACTGGCTTG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGTAAAGAGGAACGTGAGCACCATG
TCCAAAAACAGATTGACAAGACACTGAGGATGGCTGAAATCCTTTCTGGA
ACTGAAACTGTGCCATTGACTCCCGTAGCCCAAGAGGCTCTGCGAGAAGC
TGCCATTCTTTATAAACCAGCGGTGAGTACCAAGACTGTCAAAGGAGAAT
ACCGACTTCAGACGGAGGAAAAGAAAGAGGAGAGAAAACTCCGCATGCCT
TACGAAGTCCCAGAGTTTTTTTTTGTTCAAACAAGCCACGGTAGAAGAAG
ACCAGCGCATCATGCAGTTCGTGCCTATGTCTGACATGAAGTGGTATAAA
AAGATCCGGGATCAATATGAAATGCCTGGGAAACTTGACAGAGTTGTCCA
GAAAAGGCCCAAGCGCATCCGCCTTTCAAGATGGGAGCAGTTCTATGTGA
TGCCTCTTCCTCGCATTACTGACCAATACCGACCTAAATGGCGGATCCCC
AAACTGACTCTAGATGATCTGGAAATGGTGAGGTCGGCCCGACGACGTAC
CTCTTCCCCGGACCATGATCCCTCCTATTATCGAAGGATGATACTCTCTC
TGGTTGACTTGTCACATGAGGAACTGCTCCTCCCCCTTGATGACATCATC
GGCGAATACCATAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_l06.b1 MSMg01no492_l06.b1 CHROMAT_FILE:
MSMg01no492_l06.b1 PHD_FILE: MSMg01no492_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:00 2005
         (170 letters)



>mm_chr2_76353492_76354061
          Length = 570

 Score =  329 bits (170), Expect = 6e-95
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgatgtaggatcaaaaaggaacaacagcctttgttctgtagtcttttaccacagggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgatgtaggatcaaaaaggaacaacagcctttgttctgtagtcttttaccacagggaag 260

                                                                       
Query: 61  ccatacatagagtgtaacaaggaatttgtttccttattgggtcagatctgtttggttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatacatagagtgtaacaaggaatttgtttccttattgggtcagatctgtttggttatt 320

                                                             
Query: 121 tatgttatttcctttggggggcctttcattctctgtctatgttgttatca 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgttatttcctttggggggcctttcattctctgtctatgttgttatca 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no492_l06.g1 MSMg01no492_l06.g1 CHROMAT_FILE:
MSMg01no492_l06.g1 PHD_FILE: MSMg01no492_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:00 2005
         (234 letters)



>mm_chr2_76549208_76549841
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaggaacgtgagcaccatgtccaaaaacagattgacaagacactgaggatggctgaaa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aagaggaacgtgagcgccatgtccaaaaacagattgacaagacactgaggatggctgaaa 375

                                                                       
Query: 61  tcctttctggaactgaaactgtgccattgactcccgtagcccaagaggctctgcgagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcctttctggaactgaaactgtgccattgactcccgtagcccaagaggctctgcgagaag 315

                                                                       
Query: 121 ctgccattctttataaaccagcggtgagtaccaagactgtcaaaggagaataccgacttc 180
           ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 314 ctgccattctttacaaaccagcagtgagcaccaagactgtcaaaggagaataccgacttc 255

                                                                 
Query: 181 agacggaggaaaagaaagaggagagaaaactccgcatgccttacgaagtcccag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agacggaggaaaagaaagaggagagaaaactccgcatgccttacgaagtcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)